miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19231 5' -63.3 NC_004684.1 + 58389 0.66 0.419153
Target:  5'- gCACCGCG-CguGGaGGCcuUGGCCCggCCg -3'
miRNA:   3'- gGUGGUGCuGguCCgCCG--ACCGGG--GG- -5'
19231 5' -63.3 NC_004684.1 + 18340 0.66 0.419153
Target:  5'- gCCGCCcccggagcCGACC-GGCGGCgcgGuGCCgCUCg -3'
miRNA:   3'- -GGUGGu-------GCUGGuCCGCCGa--C-CGG-GGG- -5'
19231 5' -63.3 NC_004684.1 + 27187 0.66 0.419153
Target:  5'- gCCACgGCGAUCuuuGGCGGCgGuGCgaUCCa -3'
miRNA:   3'- -GGUGgUGCUGGu--CCGCCGaC-CGg-GGG- -5'
19231 5' -63.3 NC_004684.1 + 64655 0.66 0.419153
Target:  5'- aCGCCGaacguguggcCGugCGGuGUGGCgcacuuGCCCCCg -3'
miRNA:   3'- gGUGGU----------GCugGUC-CGCCGac----CGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 9318 0.66 0.419153
Target:  5'- cCCGCCGaggaacagGACgGGGaCGaGgaGGCCUCCg -3'
miRNA:   3'- -GGUGGUg-------CUGgUCC-GC-CgaCCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 58711 0.66 0.419153
Target:  5'- cUCACgCACGGCCacAGGCacCUGGCCgCaCCg -3'
miRNA:   3'- -GGUG-GUGCUGG--UCCGccGACCGG-G-GG- -5'
19231 5' -63.3 NC_004684.1 + 7345 0.66 0.419153
Target:  5'- gCGCCACGagugcgagGCCuGGCagauGCUGGagacgagacCCCCCg -3'
miRNA:   3'- gGUGGUGC--------UGGuCCGc---CGACC---------GGGGG- -5'
19231 5' -63.3 NC_004684.1 + 48389 0.66 0.419153
Target:  5'- -gACCAgCGACCuGcGCGaGCUGGCCg-- -3'
miRNA:   3'- ggUGGU-GCUGGuC-CGC-CGACCGGggg -5'
19231 5' -63.3 NC_004684.1 + 8595 0.66 0.419153
Target:  5'- gCACCuACcGCCGGGacaacCUGGCCCCa -3'
miRNA:   3'- gGUGG-UGcUGGUCCgcc--GACCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 7939 0.66 0.419153
Target:  5'- aUCGCCGcCGACCGGcGCacaccggugGGCaaGGCCgCCa -3'
miRNA:   3'- -GGUGGU-GCUGGUC-CG---------CCGa-CCGGgGG- -5'
19231 5' -63.3 NC_004684.1 + 65916 0.66 0.419153
Target:  5'- gCCGCCGC-ACCGGGCacguccGGCccGGUCUCg -3'
miRNA:   3'- -GGUGGUGcUGGUCCG------CCGa-CCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 51903 0.66 0.418278
Target:  5'- gCACCgaacucgGCGAaCGGGUGGCUGGUggUCCa -3'
miRNA:   3'- gGUGG-------UGCUgGUCCGCCGACCG--GGGg -5'
19231 5' -63.3 NC_004684.1 + 61754 0.66 0.413919
Target:  5'- uCCGCCACGggcgaACCAGGCGuccagcuccaGCaccaugcgcgccagcUcGGCCCCg -3'
miRNA:   3'- -GGUGGUGC-----UGGUCCGC----------CG---------------A-CCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 6705 0.66 0.413051
Target:  5'- gCCACCGuCGGCgCgagcaagccgaagaaAGGCgacaccuGGCUGGCCCg- -3'
miRNA:   3'- -GGUGGU-GCUG-G---------------UCCG-------CCGACCGGGgg -5'
19231 5' -63.3 NC_004684.1 + 12740 0.66 0.410453
Target:  5'- aCACCAUGGCCAuGGgGGUc-GCCCa- -3'
miRNA:   3'- gGUGGUGCUGGU-CCgCCGacCGGGgg -5'
19231 5' -63.3 NC_004684.1 + 27785 0.66 0.410453
Target:  5'- cCCGCC-CGACgGugcgcGGCGGUUcGGUCCUg -3'
miRNA:   3'- -GGUGGuGCUGgU-----CCGCCGA-CCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 26135 0.66 0.410453
Target:  5'- cCCACCAC-ACCAGcUGGa-GGCCUUCa -3'
miRNA:   3'- -GGUGGUGcUGGUCcGCCgaCCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 11761 0.66 0.410453
Target:  5'- gCAUCugGuucuCCGGuGUGG-UGGCCCCg -3'
miRNA:   3'- gGUGGugCu---GGUC-CGCCgACCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 14000 0.66 0.410453
Target:  5'- gCCACCugGACaCGGuGCaG-UGGCCCa- -3'
miRNA:   3'- -GGUGGugCUG-GUC-CGcCgACCGGGgg -5'
19231 5' -63.3 NC_004684.1 + 32561 0.66 0.410453
Target:  5'- -gACCugGAgauUCGGGCGGUcGGCUCgCu -3'
miRNA:   3'- ggUGGugCU---GGUCCGCCGaCCGGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.