miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19232 5' -64 NC_004684.1 + 41766 0.66 0.37687
Target:  5'- -gGUUGaGCCAGUgggcguacggacgcgGCCAGGUgCCGACGc -3'
miRNA:   3'- agCGAC-CGGUCG---------------CGGUCCG-GGCUGCc -5'
19232 5' -64 NC_004684.1 + 62948 0.66 0.373604
Target:  5'- gUGC-GGCCuccagcuGCGCCagcAGGCCCGcGCGu -3'
miRNA:   3'- aGCGaCCGGu------CGCGG---UCCGGGC-UGCc -5'
19232 5' -64 NC_004684.1 + 20477 0.66 0.373604
Target:  5'- cCGUUGGCCGGUcCUGGGggaUgCGGCGGg -3'
miRNA:   3'- aGCGACCGGUCGcGGUCC---GgGCUGCC- -5'
19232 5' -64 NC_004684.1 + 44911 0.66 0.373604
Target:  5'- -gGUUGGCCGcUGCCAGGgaaCCGGCcuGGa -3'
miRNA:   3'- agCGACCGGUcGCGGUCCg--GGCUG--CC- -5'
19232 5' -64 NC_004684.1 + 5291 0.66 0.373604
Target:  5'- aUGUUcGCCAGCGCCA-GCUaCGACGa -3'
miRNA:   3'- aGCGAcCGGUCGCGGUcCGG-GCUGCc -5'
19232 5' -64 NC_004684.1 + 16073 0.66 0.373604
Target:  5'- gCGCugaUGGCCGGUGaCCGGGaguuCCUGGCa- -3'
miRNA:   3'- aGCG---ACCGGUCGC-GGUCC----GGGCUGcc -5'
19232 5' -64 NC_004684.1 + 57031 0.66 0.373604
Target:  5'- gCGCUGGUCGGUcacgguggGCCAcGGCaCCagcGCGGu -3'
miRNA:   3'- aGCGACCGGUCG--------CGGU-CCG-GGc--UGCC- -5'
19232 5' -64 NC_004684.1 + 47932 0.66 0.373604
Target:  5'- gUCGCgcgGGCCAcCGCC--GCCCGGgcaUGGg -3'
miRNA:   3'- -AGCGa--CCGGUcGCGGucCGGGCU---GCC- -5'
19232 5' -64 NC_004684.1 + 39315 0.66 0.373604
Target:  5'- gUCGCgcggcggcccGGCCAcacCGCCGGGgCCGACc- -3'
miRNA:   3'- -AGCGa---------CCGGUc--GCGGUCCgGGCUGcc -5'
19232 5' -64 NC_004684.1 + 10244 0.66 0.371167
Target:  5'- -aGCUGGCCGuGCGCguggagCGGGCCaaccaacuggccagCGACGc -3'
miRNA:   3'- agCGACCGGU-CGCG------GUCCGG--------------GCUGCc -5'
19232 5' -64 NC_004684.1 + 6835 0.66 0.365523
Target:  5'- -aGCUGGCCuacGGCGCgaaGGGCgacgCCGugGu -3'
miRNA:   3'- agCGACCGG---UCGCGg--UCCG----GGCugCc -5'
19232 5' -64 NC_004684.1 + 5032 0.66 0.365523
Target:  5'- aCGgUGGCCAccacGCGUCuGGCacCCGGCGc -3'
miRNA:   3'- aGCgACCGGU----CGCGGuCCG--GGCUGCc -5'
19232 5' -64 NC_004684.1 + 55448 0.66 0.365523
Target:  5'- gUGCcaGGCUGGCGaCCAuGGCCagcgGACGGc -3'
miRNA:   3'- aGCGa-CCGGUCGC-GGU-CCGGg---CUGCC- -5'
19232 5' -64 NC_004684.1 + 57005 0.66 0.365523
Target:  5'- aCGCUGGCg---GCCuGGuaCCCGGCGGu -3'
miRNA:   3'- aGCGACCGgucgCGGuCC--GGGCUGCC- -5'
19232 5' -64 NC_004684.1 + 7857 0.66 0.365523
Target:  5'- gCGCUGGCgGugcaggaccuGUGCgCAGGCCuaCGACGc -3'
miRNA:   3'- aGCGACCGgU----------CGCG-GUCCGG--GCUGCc -5'
19232 5' -64 NC_004684.1 + 44434 0.66 0.365523
Target:  5'- gCGUUGGC--GCGCUucuGGCCuuCGGCGGu -3'
miRNA:   3'- aGCGACCGguCGCGGu--CCGG--GCUGCC- -5'
19232 5' -64 NC_004684.1 + 18043 0.66 0.365523
Target:  5'- -aGCcugGGCCugaucccgucAGCGCCGaccauGGCcgCCGACGGg -3'
miRNA:   3'- agCGa--CCGG----------UCGCGGU-----CCG--GGCUGCC- -5'
19232 5' -64 NC_004684.1 + 37746 0.66 0.365523
Target:  5'- cUCGUUGGCCAGauggaagGUCAGuaCCCGACu- -3'
miRNA:   3'- -AGCGACCGGUCg------CGGUCc-GGGCUGcc -5'
19232 5' -64 NC_004684.1 + 11975 0.66 0.364722
Target:  5'- gCGCUGgguggucuccaccGCCAGCGCagcgaAGGUuuCCGGCGc -3'
miRNA:   3'- aGCGAC-------------CGGUCGCGg----UCCG--GGCUGCc -5'
19232 5' -64 NC_004684.1 + 3872 0.66 0.363123
Target:  5'- cCGCU-GCgCAGUGCCaAGGCCUGGucagacauccucucCGGg -3'
miRNA:   3'- aGCGAcCG-GUCGCGG-UCCGGGCU--------------GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.