miRNA display CGI


Results 1 - 20 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19234 5' -59.7 NC_004684.1 + 52232 0.65 0.547481
Target:  5'- gUGCGUGGcgGCgGC-GGCCAGCugcgcgcuggcguGGAUCa -3'
miRNA:   3'- -ACGCGCCa-CG-CGuCCGGUCG-------------CUUAGc -5'
19234 5' -59.7 NC_004684.1 + 46299 0.65 0.545413
Target:  5'- aGCGCGuugcggcgcuuggcGUGCGCcagcgucuggAGGCUGGCGAAc-- -3'
miRNA:   3'- aCGCGC--------------CACGCG----------UCCGGUCGCUUagc -5'
19234 5' -59.7 NC_004684.1 + 16802 0.65 0.545413
Target:  5'- cGUGUGGUGgGCgcgccauucgcgccAGGUUcaaAGCGggUCGc -3'
miRNA:   3'- aCGCGCCACgCG--------------UCCGG---UCGCuuAGC- -5'
19234 5' -59.7 NC_004684.1 + 54634 0.66 0.538197
Target:  5'- gGCGCaGccGCGCGGGCCAagaGgGcGUCGa -3'
miRNA:   3'- aCGCGcCa-CGCGUCCGGU---CgCuUAGC- -5'
19234 5' -59.7 NC_004684.1 + 4433 0.66 0.538197
Target:  5'- cGCGCGGgccugcugGCGCagcuggAGGCCGcacgugcgcGCGAggccGUCGu -3'
miRNA:   3'- aCGCGCCa-------CGCG------UCCGGU---------CGCU----UAGC- -5'
19234 5' -59.7 NC_004684.1 + 30859 0.66 0.538197
Target:  5'- aGCGCGGUGacgGCAGGCgAuguGUGGuUUGa -3'
miRNA:   3'- aCGCGCCACg--CGUCCGgU---CGCUuAGC- -5'
19234 5' -59.7 NC_004684.1 + 7581 0.66 0.538197
Target:  5'- gUGCGgcUGGUGCGCGGcaacCCGGUG-GUCGu -3'
miRNA:   3'- -ACGC--GCCACGCGUCc---GGUCGCuUAGC- -5'
19234 5' -59.7 NC_004684.1 + 11030 0.66 0.538197
Target:  5'- --aGCGGUGC-CGGGCgauCAGCuGGUCGa -3'
miRNA:   3'- acgCGCCACGcGUCCG---GUCGcUUAGC- -5'
19234 5' -59.7 NC_004684.1 + 65713 0.66 0.538197
Target:  5'- cGgGCccgGGUGCGUcGGuuCCAGgGAGUCGa -3'
miRNA:   3'- aCgCG---CCACGCGuCC--GGUCgCUUAGC- -5'
19234 5' -59.7 NC_004684.1 + 31671 0.66 0.537169
Target:  5'- cUGUcgGCGGUGCGggugaaaCAGGaCCGGCuGAUCa -3'
miRNA:   3'- -ACG--CGCCACGC-------GUCC-GGUCGcUUAGc -5'
19234 5' -59.7 NC_004684.1 + 50788 0.66 0.535114
Target:  5'- cGCGCGGUcgguGCGCaacauGaagucgucgcgcuuGGcCCAGCGggUCa -3'
miRNA:   3'- aCGCGCCA----CGCG-----U--------------CC-GGUCGCuuAGc -5'
19234 5' -59.7 NC_004684.1 + 52405 0.66 0.535114
Target:  5'- cGCGCaG-GCGCAGGUUcugcguugcacgcaAGCGGAccUCGg -3'
miRNA:   3'- aCGCGcCaCGCGUCCGG--------------UCGCUU--AGC- -5'
19234 5' -59.7 NC_004684.1 + 28077 0.66 0.527946
Target:  5'- gGCGCGGcaacugggGCGCucguuAGGCgAGCugcaccGAGUCGa -3'
miRNA:   3'- aCGCGCCa-------CGCG-----UCCGgUCG------CUUAGC- -5'
19234 5' -59.7 NC_004684.1 + 34051 0.66 0.527946
Target:  5'- gGC-CGGacUGCaccgaGguGGCCAGCGAgGUCGa -3'
miRNA:   3'- aCGcGCC--ACG-----CguCCGGUCGCU-UAGC- -5'
19234 5' -59.7 NC_004684.1 + 43651 0.66 0.527946
Target:  5'- cUGCGCaccgagcaGUGCGCc-GCCAGCGAuGUUGa -3'
miRNA:   3'- -ACGCGc-------CACGCGucCGGUCGCU-UAGC- -5'
19234 5' -59.7 NC_004684.1 + 36773 0.66 0.527946
Target:  5'- cGCGCccGGUGCcgacGCuGGUCGGCGGcggcUCGg -3'
miRNA:   3'- aCGCG--CCACG----CGuCCGGUCGCUu---AGC- -5'
19234 5' -59.7 NC_004684.1 + 37265 0.66 0.527946
Target:  5'- cUGCGCGGUgccuguagcucGCGCAGGCguugcuccacaCuGCGGGcccauUCGg -3'
miRNA:   3'- -ACGCGCCA-----------CGCGUCCG-----------GuCGCUU-----AGC- -5'
19234 5' -59.7 NC_004684.1 + 43754 0.66 0.527946
Target:  5'- aGCaGCGGUGCcaGCaAGGCCgggacAGCGAucuuGUUGa -3'
miRNA:   3'- aCG-CGCCACG--CG-UCCGG-----UCGCU----UAGC- -5'
19234 5' -59.7 NC_004684.1 + 66529 0.66 0.517768
Target:  5'- aGCGCGGcccgGCGGGCaCGGCGGuaggCGu -3'
miRNA:   3'- aCGCGCCacg-CGUCCG-GUCGCUua--GC- -5'
19234 5' -59.7 NC_004684.1 + 59828 0.66 0.517768
Target:  5'- gGCGCGGUGC-CGGuGUaGGCGAAcCa -3'
miRNA:   3'- aCGCGCCACGcGUC-CGgUCGCUUaGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.