Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19238 | 3' | -58.7 | NC_004684.1 | + | 52202 | 0.66 | 0.590888 |
Target: 5'- uUUGUuGCCgCUGCGCAgcaccagucccagguGCGUGgCGGCGg -3' miRNA: 3'- -AGCAcCGG-GACGUGU---------------UGCAC-GCCGUg -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 59931 | 0.66 | 0.586636 |
Target: 5'- gUCGguguccGGCCCcacgUGCGCGuUGUgcugGCGGCGCu -3' miRNA: 3'- -AGCa-----CCGGG----ACGUGUuGCA----CGCCGUG- -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 460 | 0.66 | 0.586636 |
Target: 5'- aUCGUGGCCgUGgACAACcgggccagcgagGU-CGGCAg -3' miRNA: 3'- -AGCACCGGgACgUGUUG------------CAcGCCGUg -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 57064 | 0.66 | 0.586636 |
Target: 5'- gUCGaUGGCggCCUGCGuuGCG-GCGcGCACa -3' miRNA: 3'- -AGC-ACCG--GGACGUguUGCaCGC-CGUG- -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 12759 | 0.66 | 0.586636 |
Target: 5'- cUCuUGGCCC-GCGCGgcuGCGccUGCGGC-Ca -3' miRNA: 3'- -AGcACCGGGaCGUGU---UGC--ACGCCGuG- -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 43195 | 0.66 | 0.586636 |
Target: 5'- gUCG-GGCaCCgcagGCACcggcauuuugGGCG-GCGGCACc -3' miRNA: 3'- -AGCaCCG-GGa---CGUG----------UUGCaCGCCGUG- -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 59140 | 0.66 | 0.576032 |
Target: 5'- aCGUGGCgggaCUGCAUGuUGU-CGGCGCu -3' miRNA: 3'- aGCACCGg---GACGUGUuGCAcGCCGUG- -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 28118 | 0.66 | 0.576032 |
Target: 5'- uUCGaGGCCUUGCugGugGccUGCacGCACg -3' miRNA: 3'- -AGCaCCGGGACGugUugC--ACGc-CGUG- -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 15680 | 0.66 | 0.576032 |
Target: 5'- gUCGUGGCCagcggcgGCAcCGACGccacCGGCAUc -3' miRNA: 3'- -AGCACCGGga-----CGU-GUUGCac--GCCGUG- -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 10646 | 0.66 | 0.565472 |
Target: 5'- cCGUGGUCUggUGC-CGGuuccCGUGCuGGCGCg -3' miRNA: 3'- aGCACCGGG--ACGuGUU----GCACG-CCGUG- -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 9027 | 0.66 | 0.565472 |
Target: 5'- aUCGa--CCCUaaugcGUACGugGUGUGGCACg -3' miRNA: 3'- -AGCaccGGGA-----CGUGUugCACGCCGUG- -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 58770 | 0.66 | 0.565472 |
Target: 5'- -gGUGGCUgcaCUGCGCAcaGUGUGGgGCc -3' miRNA: 3'- agCACCGG---GACGUGUugCACGCCgUG- -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 52753 | 0.66 | 0.565472 |
Target: 5'- gUCGUGGCCgCUgGCGCAGuCGUugacGCccuccucguagaGGCGCu -3' miRNA: 3'- -AGCACCGG-GA-CGUGUU-GCA----CG------------CCGUG- -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 40052 | 0.66 | 0.564418 |
Target: 5'- cUCGcacGGCUCucgucguUGguCAGCGUGCGGuCGCa -3' miRNA: 3'- -AGCa--CCGGG-------ACguGUUGCACGCC-GUG- -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 23765 | 0.66 | 0.554963 |
Target: 5'- uUCG-GGCCgugggGCGCGGCGUugGGCGCg -3' miRNA: 3'- -AGCaCCGGga---CGUGUUGCAcgCCGUG- -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 9138 | 0.66 | 0.554963 |
Target: 5'- uUCGaccGCCUcgGCGCGGCagGUGCGGCAa -3' miRNA: 3'- -AGCac-CGGGa-CGUGUUG--CACGCCGUg -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 41048 | 0.66 | 0.554963 |
Target: 5'- aCGgaaUGGCCgaGCGCAccGCGU-CGGCAa -3' miRNA: 3'- aGC---ACCGGgaCGUGU--UGCAcGCCGUg -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 25209 | 0.66 | 0.554963 |
Target: 5'- ---cGGCCCacUGCuCAccgcGCaGUGCGGCGCu -3' miRNA: 3'- agcaCCGGG--ACGuGU----UG-CACGCCGUG- -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 3445 | 0.66 | 0.554963 |
Target: 5'- cCGUGGCCaugugGUACGGCacccaGUuCGGCGCg -3' miRNA: 3'- aGCACCGGga---CGUGUUG-----CAcGCCGUG- -5' |
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19238 | 3' | -58.7 | NC_004684.1 | + | 42894 | 0.66 | 0.544511 |
Target: 5'- gCGcGGCCCUGCGgCAcCGccccgGCGGUAg -3' miRNA: 3'- aGCaCCGGGACGU-GUuGCa----CGCCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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