miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19239 5' -56.2 NC_004684.1 + 4692 0.66 0.746351
Target:  5'- -uCAACC-CGAACgCGCGCaucauuCUGGCc -3'
miRNA:   3'- cuGUUGGuGCUUGaGCGCGgc----GACCG- -5'
19239 5' -56.2 NC_004684.1 + 13599 0.66 0.746351
Target:  5'- cGCAACC-CGAucccaGCGCCGCgccGGUc -3'
miRNA:   3'- cUGUUGGuGCUugag-CGCGGCGa--CCG- -5'
19239 5' -56.2 NC_004684.1 + 7576 0.66 0.746351
Target:  5'- cGGC-ACCGCGccauGCUgaGCGacaUGCUGGCg -3'
miRNA:   3'- -CUGuUGGUGCu---UGAg-CGCg--GCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 32236 0.66 0.746351
Target:  5'- cGACAGCggCGCGAucuACUgCGCGUCggaccuGUUGGCg -3'
miRNA:   3'- -CUGUUG--GUGCU---UGA-GCGCGG------CGACCG- -5'
19239 5' -56.2 NC_004684.1 + 16935 0.66 0.746351
Target:  5'- aACAGCCccaccugguACGGAUaUGCGCUuaUGGCg -3'
miRNA:   3'- cUGUUGG---------UGCUUGaGCGCGGcgACCG- -5'
19239 5' -56.2 NC_004684.1 + 21527 0.66 0.746351
Target:  5'- cGACAccACCAcCGAGCUgGCGgUGgUGGa -3'
miRNA:   3'- -CUGU--UGGU-GCUUGAgCGCgGCgACCg -5'
19239 5' -56.2 NC_004684.1 + 62189 0.66 0.746351
Target:  5'- cGAUGAUgGCGAACaCGuUGCCGUccUGGCc -3'
miRNA:   3'- -CUGUUGgUGCUUGaGC-GCGGCG--ACCG- -5'
19239 5' -56.2 NC_004684.1 + 2696 0.66 0.740211
Target:  5'- uGGCGGCCGCcaacaugcucgacugGGACguaCGCaagguGCCGCUGcGCg -3'
miRNA:   3'- -CUGUUGGUG---------------CUUGa--GCG-----CGGCGAC-CG- -5'
19239 5' -56.2 NC_004684.1 + 67036 0.66 0.739184
Target:  5'- uGGCcuGGCCAcCGAGCugcugcgcacgcuUCGCGCCGUacccggugcgggcguUGGCc -3'
miRNA:   3'- -CUG--UUGGU-GCUUG-------------AGCGCGGCG---------------ACCG- -5'
19239 5' -56.2 NC_004684.1 + 29370 0.66 0.736096
Target:  5'- gGGCGuCCAgGAACuggUCGCGCUuguGCUuGGCc -3'
miRNA:   3'- -CUGUuGGUgCUUG---AGCGCGG---CGA-CCG- -5'
19239 5' -56.2 NC_004684.1 + 43811 0.66 0.736096
Target:  5'- -cCGGCgGCGGugUuCGCGCgGCccGGCa -3'
miRNA:   3'- cuGUUGgUGCUugA-GCGCGgCGa-CCG- -5'
19239 5' -56.2 NC_004684.1 + 45833 0.66 0.736096
Target:  5'- uGACGGCCucgGCGGucauGC-CGCGCuCGUugaUGGCg -3'
miRNA:   3'- -CUGUUGG---UGCU----UGaGCGCG-GCG---ACCG- -5'
19239 5' -56.2 NC_004684.1 + 61686 0.66 0.736096
Target:  5'- uGCGG-CGCGAGggCGCGCUGCUccaccGGCg -3'
miRNA:   3'- cUGUUgGUGCUUgaGCGCGGCGA-----CCG- -5'
19239 5' -56.2 NC_004684.1 + 41308 0.66 0.736096
Target:  5'- aGGCGACCGCuGGAgUCGUacGCCGa-GGUg -3'
miRNA:   3'- -CUGUUGGUG-CUUgAGCG--CGGCgaCCG- -5'
19239 5' -56.2 NC_004684.1 + 43640 0.66 0.735065
Target:  5'- cACGGCC-CGAACUgcgcaccgagcagUGCGCCGCcaGCg -3'
miRNA:   3'- cUGUUGGuGCUUGA-------------GCGCGGCGacCG- -5'
19239 5' -56.2 NC_004684.1 + 17926 0.66 0.725741
Target:  5'- cGACAACCccgGCGAaccguucgACUCGUGgaUCGC-GGCa -3'
miRNA:   3'- -CUGUUGG---UGCU--------UGAGCGC--GGCGaCCG- -5'
19239 5' -56.2 NC_004684.1 + 36212 0.66 0.725741
Target:  5'- uGCAGCUGCGcAGCguggccacCGCcgagaCCGCUGGCg -3'
miRNA:   3'- cUGUUGGUGC-UUGa-------GCGc----GGCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 16332 0.66 0.725741
Target:  5'- aAUGACCAgCGAggagcgGCUgGCGCUggccgacaaGCUGGCg -3'
miRNA:   3'- cUGUUGGU-GCU------UGAgCGCGG---------CGACCG- -5'
19239 5' -56.2 NC_004684.1 + 51813 0.66 0.725741
Target:  5'- cACGGCCA--GGC-CGCGCgCGCUGcGCu -3'
miRNA:   3'- cUGUUGGUgcUUGaGCGCG-GCGAC-CG- -5'
19239 5' -56.2 NC_004684.1 + 15239 0.66 0.725741
Target:  5'- gGACAGCUACG-GC-C-CGCCGCUGccacGCa -3'
miRNA:   3'- -CUGUUGGUGCuUGaGcGCGGCGAC----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.