miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19242 5' -56.9 NC_004684.1 + 27865 0.66 0.699698
Target:  5'- aGGC-CuGCACGCaCGGCGGuauuAUCCCGuGCa -3'
miRNA:   3'- -UCGuGuUGUGUG-GCCGCU----UGGGGC-UG- -5'
19242 5' -56.9 NC_004684.1 + 53236 0.66 0.699698
Target:  5'- -cCACGugGCACgGGUagguGAUCCCGGCg -3'
miRNA:   3'- ucGUGUugUGUGgCCGc---UUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 38987 0.66 0.699698
Target:  5'- cGCGCGGguccaACACCGGCGucACgCaCGGCg -3'
miRNA:   3'- uCGUGUUg----UGUGGCCGCu-UGgG-GCUG- -5'
19242 5' -56.9 NC_004684.1 + 57549 0.66 0.699698
Target:  5'- gAGCGCGAC-CGCCGaGCuGcGCCgguuggCCGACa -3'
miRNA:   3'- -UCGUGUUGuGUGGC-CG-CuUGG------GGCUG- -5'
19242 5' -56.9 NC_004684.1 + 61433 0.66 0.699698
Target:  5'- -aUACGGgACACCGGCGGcauugucucGCCgCCGGu -3'
miRNA:   3'- ucGUGUUgUGUGGCCGCU---------UGG-GGCUg -5'
19242 5' -56.9 NC_004684.1 + 54438 0.66 0.699698
Target:  5'- cGCGuCGGCgggaGCACCGG-GggUgCCGACg -3'
miRNA:   3'- uCGU-GUUG----UGUGGCCgCuuGgGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 53778 0.66 0.699698
Target:  5'- uGCGCAggaAC-CACuCGGUGAGuuCCGGCc -3'
miRNA:   3'- uCGUGU---UGuGUG-GCCGCUUggGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 3545 0.66 0.699698
Target:  5'- cGCACGugGCACCGacaGCGuGCgCCG-Cg -3'
miRNA:   3'- uCGUGUugUGUGGC---CGCuUGgGGCuG- -5'
19242 5' -56.9 NC_004684.1 + 6117 0.66 0.699698
Target:  5'- cGGCGCA----GCUGuCGAAUCCCGACa -3'
miRNA:   3'- -UCGUGUugugUGGCcGCUUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 21507 0.66 0.699698
Target:  5'- gAGgACAAgGCACCGGCcaucGAcaccACCaCCGAg -3'
miRNA:   3'- -UCgUGUUgUGUGGCCG----CU----UGG-GGCUg -5'
19242 5' -56.9 NC_004684.1 + 1509 0.66 0.699698
Target:  5'- uGCGCGAC-CACuaCGGCGucAACCCCu-- -3'
miRNA:   3'- uCGUGUUGuGUG--GCCGC--UUGGGGcug -5'
19242 5' -56.9 NC_004684.1 + 38749 0.66 0.699698
Target:  5'- cGC-CAACACGCuCGGUGAGCaUUgGACc -3'
miRNA:   3'- uCGuGUUGUGUG-GCCGCUUG-GGgCUG- -5'
19242 5' -56.9 NC_004684.1 + 2416 0.66 0.699698
Target:  5'- uGGCACcguucCAgACCGGCG-ACaaggCCGACa -3'
miRNA:   3'- -UCGUGuu---GUgUGGCCGCuUGg---GGCUG- -5'
19242 5' -56.9 NC_004684.1 + 5305 0.66 0.699698
Target:  5'- cAGCuacgACGACGCGCUGGCG-ACCgUGcaGCa -3'
miRNA:   3'- -UCG----UGUUGUGUGGCCGCuUGGgGC--UG- -5'
19242 5' -56.9 NC_004684.1 + 1999 0.66 0.699698
Target:  5'- uGCugGccuGgGCGCUGGaccGCCCCGACg -3'
miRNA:   3'- uCGugU---UgUGUGGCCgcuUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 57168 0.66 0.695466
Target:  5'- uGGC-CGACGCGCacgcucgggcgcaGGCGGGCCUgGAa -3'
miRNA:   3'- -UCGuGUUGUGUGg------------CCGCUUGGGgCUg -5'
19242 5' -56.9 NC_004684.1 + 29255 0.66 0.690162
Target:  5'- cGCGCGaaugcgucgaagucgGCcuccacuugcuccgGCACC-GCGAACUCCGACg -3'
miRNA:   3'- uCGUGU---------------UG--------------UGUGGcCGCUUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 45771 0.66 0.6891
Target:  5'- uGGCA-GGCGCACCuccaGGCGGucGCCCuCGAa -3'
miRNA:   3'- -UCGUgUUGUGUGG----CCGCU--UGGG-GCUg -5'
19242 5' -56.9 NC_004684.1 + 40112 0.66 0.6891
Target:  5'- uGGC-CGuaGCggGCGCUGGCG-GCCUCGGCa -3'
miRNA:   3'- -UCGuGU--UG--UGUGGCCGCuUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 22006 0.66 0.6891
Target:  5'- aGGC-CAugGgGCCGGUgcucgccgaccuGAACCgCGACa -3'
miRNA:   3'- -UCGuGUugUgUGGCCG------------CUUGGgGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.