miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19244 5' -59.3 NC_004684.1 + 65760 0.66 0.5598
Target:  5'- -gGGCGuuGGcCGCCGCGCGCcGGUGg-- -3'
miRNA:   3'- agCUGU--UC-GCGGCGUGCGuCCACgga -5'
19244 5' -59.3 NC_004684.1 + 39537 0.66 0.5598
Target:  5'- cCGGCAcuccugcGUGCacaGCGCGCucGGUGCCc -3'
miRNA:   3'- aGCUGUu------CGCGg--CGUGCGu-CCACGGa -5'
19244 5' -59.3 NC_004684.1 + 59085 0.66 0.5598
Target:  5'- cCGGCGucAGCGCCaaccacuccgGCAC-CGGGUuGCCg -3'
miRNA:   3'- aGCUGU--UCGCGG----------CGUGcGUCCA-CGGa -5'
19244 5' -59.3 NC_004684.1 + 53419 0.66 0.5598
Target:  5'- cUGGCcuGCGCCGCGCGac--UGCCa -3'
miRNA:   3'- aGCUGuuCGCGGCGUGCguccACGGa -5'
19244 5' -59.3 NC_004684.1 + 40816 0.66 0.5598
Target:  5'- gCGcACAc-CGCCGCGCGCcAGGgcgcGCCg -3'
miRNA:   3'- aGC-UGUucGCGGCGUGCG-UCCa---CGGa -5'
19244 5' -59.3 NC_004684.1 + 29855 0.66 0.549379
Target:  5'- cCGGCGGGUcaucGCCGC-CGCAGucGUGCa- -3'
miRNA:   3'- aGCUGUUCG----CGGCGuGCGUC--CACGga -5'
19244 5' -59.3 NC_004684.1 + 46515 0.66 0.549379
Target:  5'- gCGAUcAGCGCCGCACGguccuUGCCc -3'
miRNA:   3'- aGCUGuUCGCGGCGUGCgucc-ACGGa -5'
19244 5' -59.3 NC_004684.1 + 3865 0.66 0.549379
Target:  5'- -aGGCA--CGCCGCuGCGCA-GUGCCa -3'
miRNA:   3'- agCUGUucGCGGCG-UGCGUcCACGGa -5'
19244 5' -59.3 NC_004684.1 + 9153 0.66 0.549379
Target:  5'- gCGGCAGGUGCgGCAacugaccuUGCcGGUGCg- -3'
miRNA:   3'- aGCUGUUCGCGgCGU--------GCGuCCACGga -5'
19244 5' -59.3 NC_004684.1 + 51693 0.66 0.549379
Target:  5'- uUUGACcAGCGCCGgAC-CuuuaccGGUGCCg -3'
miRNA:   3'- -AGCUGuUCGCGGCgUGcGu-----CCACGGa -5'
19244 5' -59.3 NC_004684.1 + 61319 0.66 0.549379
Target:  5'- cCGcCGGGcCGCCGCccucggcgGCGUAGGUGgCg -3'
miRNA:   3'- aGCuGUUC-GCGGCG--------UGCGUCCACgGa -5'
19244 5' -59.3 NC_004684.1 + 31618 0.66 0.549379
Target:  5'- aCGAUgGAGCGCgGCGCGCGcuGG-GUCUg -3'
miRNA:   3'- aGCUG-UUCGCGgCGUGCGU--CCaCGGA- -5'
19244 5' -59.3 NC_004684.1 + 6495 0.66 0.54834
Target:  5'- uUCGACAucgGGUGCUccuucucgggGCugGCGGGUcugucccGCCg -3'
miRNA:   3'- -AGCUGU---UCGCGG----------CGugCGUCCA-------CGGa -5'
19244 5' -59.3 NC_004684.1 + 14389 0.66 0.539019
Target:  5'- cCGACAccgGGcCGUCGC-CGCAGGagaUGCUg -3'
miRNA:   3'- aGCUGU---UC-GCGGCGuGCGUCC---ACGGa -5'
19244 5' -59.3 NC_004684.1 + 12502 0.66 0.539019
Target:  5'- cCGcCucGUGCCGCACguuguGCAGG-GCCa -3'
miRNA:   3'- aGCuGuuCGCGGCGUG-----CGUCCaCGGa -5'
19244 5' -59.3 NC_004684.1 + 1954 0.66 0.539019
Target:  5'- gUGGCcgcGCGCCGCACGcCAGcGcagcGCCUg -3'
miRNA:   3'- aGCUGuu-CGCGGCGUGC-GUC-Ca---CGGA- -5'
19244 5' -59.3 NC_004684.1 + 14295 0.66 0.539019
Target:  5'- gUGGCcuuGCagGCCGcCGCGCAGGUGUa- -3'
miRNA:   3'- aGCUGuu-CG--CGGC-GUGCGUCCACGga -5'
19244 5' -59.3 NC_004684.1 + 23109 0.66 0.539019
Target:  5'- uUCGGCGA-CGCCGUGCacgaGUGGuGUGCCg -3'
miRNA:   3'- -AGCUGUUcGCGGCGUG----CGUC-CACGGa -5'
19244 5' -59.3 NC_004684.1 + 21140 0.66 0.539019
Target:  5'- -gGACGAGUuCCacCACGCcGGUGCCg -3'
miRNA:   3'- agCUGUUCGcGGc-GUGCGuCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 46766 0.66 0.528727
Target:  5'- cUCGACGcGCuGgCGCuCGCcGGUGCCc -3'
miRNA:   3'- -AGCUGUuCG-CgGCGuGCGuCCACGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.