miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19246 3' -62.1 NC_004684.1 + 40086 0.66 0.416633
Target:  5'- cGCagauaCCGCAGCGGccgaucucGUGGCCGUagcgggcgcuggCGGCCu -3'
miRNA:   3'- -UGg----GGUGUCGUC--------CACCGGUA------------GCCGGu -5'
19246 3' -62.1 NC_004684.1 + 47863 0.66 0.416633
Target:  5'- cGCaCCCGCAGCuGGcguUGaGCCAgugCGuGCCGu -3'
miRNA:   3'- -UG-GGGUGUCGuCC---AC-CGGUa--GC-CGGU- -5'
19246 3' -62.1 NC_004684.1 + 22733 0.66 0.416633
Target:  5'- cGCCgCCGCAGCagcGGGUGacGCaGUgGGCCGa -3'
miRNA:   3'- -UGG-GGUGUCG---UCCAC--CGgUAgCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 61331 0.66 0.416633
Target:  5'- cGCCCUcgGCGGCguAGGUGGC----GGCCAg -3'
miRNA:   3'- -UGGGG--UGUCG--UCCACCGguagCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 25852 0.66 0.416633
Target:  5'- uGCUCgGCGGCcuGUucaacGGCC-UCGGCCAg -3'
miRNA:   3'- -UGGGgUGUCGucCA-----CCGGuAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 20913 0.66 0.40771
Target:  5'- cGCCuaCCGCAGCGgcaagcgcguGGUGGCCc-UGGCCc -3'
miRNA:   3'- -UGG--GGUGUCGU----------CCACCGGuaGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 5666 0.66 0.40771
Target:  5'- uGCCUCAgccgUGGUcggAGGUGGCCGgggccCGGCCu -3'
miRNA:   3'- -UGGGGU----GUCG---UCCACCGGUa----GCCGGu -5'
19246 3' -62.1 NC_004684.1 + 63123 0.66 0.40771
Target:  5'- gGCCCUugcuggcgauGguGguGGUGGCCGagugCGGCUc -3'
miRNA:   3'- -UGGGG----------UguCguCCACCGGUa---GCCGGu -5'
19246 3' -62.1 NC_004684.1 + 11363 0.66 0.40771
Target:  5'- -gCCCACGGU-GGUGGCCAgcagcgUGGUg- -3'
miRNA:   3'- ugGGGUGUCGuCCACCGGUa-----GCCGgu -5'
19246 3' -62.1 NC_004684.1 + 49535 0.66 0.40771
Target:  5'- cACCCgGCGGUGugcgcGGUGGCCGacuUCGGgCu -3'
miRNA:   3'- -UGGGgUGUCGU-----CCACCGGU---AGCCgGu -5'
19246 3' -62.1 NC_004684.1 + 1255 0.66 0.40771
Target:  5'- gGCCCCGgcccagaugcgcUGGCuGGUGGCCAUguucCGGUa- -3'
miRNA:   3'- -UGGGGU------------GUCGuCCACCGGUA----GCCGgu -5'
19246 3' -62.1 NC_004684.1 + 61647 0.66 0.402415
Target:  5'- cCCCCGgaggugucggcgaagUAGCAGGUGugcgccugcacGCCAUUGGCg- -3'
miRNA:   3'- uGGGGU---------------GUCGUCCAC-----------CGGUAGCCGgu -5'
19246 3' -62.1 NC_004684.1 + 11467 0.66 0.402415
Target:  5'- cGCCCCGguccaccuuggccacCAGCuccggcGGUaacaGGCCAUCGGgCAg -3'
miRNA:   3'- -UGGGGU---------------GUCGu-----CCA----CCGGUAGCCgGU- -5'
19246 3' -62.1 NC_004684.1 + 24479 0.66 0.398908
Target:  5'- cACCUgGCGGCguucgucgucAGGUGGCgGUCucggugccagaGGCCGg -3'
miRNA:   3'- -UGGGgUGUCG----------UCCACCGgUAG-----------CCGGU- -5'
19246 3' -62.1 NC_004684.1 + 13114 0.66 0.398908
Target:  5'- cACCCC-CGGcCGGGUGGCgGcgcUGGCUg -3'
miRNA:   3'- -UGGGGuGUC-GUCCACCGgUa--GCCGGu -5'
19246 3' -62.1 NC_004684.1 + 32938 0.66 0.398908
Target:  5'- uGCCUCG-GGCAGGaugGGCCGcUCGGgCAg -3'
miRNA:   3'- -UGGGGUgUCGUCCa--CCGGU-AGCCgGU- -5'
19246 3' -62.1 NC_004684.1 + 43923 0.66 0.398035
Target:  5'- cACCaCCGCcgucacgcugucgGGCAuGGaGGCCAgcagaUCGGCCAc -3'
miRNA:   3'- -UGG-GGUG-------------UCGU-CCaCCGGU-----AGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 50022 0.66 0.393686
Target:  5'- cACCgUcgGCGGCAGcGUGGCCGgugccuggcuccaGGCCAg -3'
miRNA:   3'- -UGGgG--UGUCGUC-CACCGGUag-----------CCGGU- -5'
19246 3' -62.1 NC_004684.1 + 64220 0.66 0.390229
Target:  5'- cACCUgggaCACGGCGu-UGGCC-UCGGCCAg -3'
miRNA:   3'- -UGGG----GUGUCGUccACCGGuAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 52108 0.66 0.390229
Target:  5'- aGCCaaACgucgGGCuGGUGGCCAccagggugUUGGCCAg -3'
miRNA:   3'- -UGGggUG----UCGuCCACCGGU--------AGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.