miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19247 3' -53.5 NC_004684.1 + 7561 0.66 0.8732
Target:  5'- aCCGGCCccggGUggCGCUGGUGcGGCUG-GUg -3'
miRNA:   3'- -GGCUGG----UAaaGCGGCUAC-UCGACgCA- -5'
19247 3' -53.5 NC_004684.1 + 2126 0.66 0.8732
Target:  5'- gUGGCCA--UUGCCGGguuccuggGAGCgGCGUu -3'
miRNA:   3'- gGCUGGUaaAGCGGCUa-------CUCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 18066 0.66 0.8732
Target:  5'- gCCGACCAUggcCGCCGAcGGGU--CGa -3'
miRNA:   3'- -GGCUGGUAaa-GCGGCUaCUCGacGCa -5'
19247 3' -53.5 NC_004684.1 + 19212 0.66 0.871639
Target:  5'- gCGAUagccugaGCCGGUGAGUUGUGa -3'
miRNA:   3'- gGCUGguaaag-CGGCUACUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 51045 0.66 0.857154
Target:  5'- gCGGCCAc--CGCCGGUGAcgaUGCGc -3'
miRNA:   3'- gGCUGGUaaaGCGGCUACUcg-ACGCa -5'
19247 3' -53.5 NC_004684.1 + 12509 0.66 0.857154
Target:  5'- uUGAgCAgugUUCGuacugcCCGAUGAGCUGCc- -3'
miRNA:   3'- gGCUgGUa--AAGC------GGCUACUCGACGca -5'
19247 3' -53.5 NC_004684.1 + 7535 0.66 0.857154
Target:  5'- aCCGACCuggcCGCCG-UG-GCgGCGUu -3'
miRNA:   3'- -GGCUGGuaaaGCGGCuACuCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 20139 0.66 0.856326
Target:  5'- aCGugCGguucUUCGCCGGUGAcggcccggcccuuGCgGCGUu -3'
miRNA:   3'- gGCugGUa---AAGCGGCUACU-------------CGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 63377 0.66 0.848778
Target:  5'- gCCGACgCGcca-GCCGAUG-GCgGCGUa -3'
miRNA:   3'- -GGCUG-GUaaagCGGCUACuCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 9531 0.66 0.847076
Target:  5'- uCCGACCGcgagcuggugCGCCGGUugGAGCcggUGCGc -3'
miRNA:   3'- -GGCUGGUaaa-------GCGGCUA--CUCG---ACGCa -5'
19247 3' -53.5 NC_004684.1 + 16616 0.66 0.840179
Target:  5'- aCCGACCGcg-CGgacaugggacaCCGAUGGGCgaagGUGUa -3'
miRNA:   3'- -GGCUGGUaaaGC-----------GGCUACUCGa---CGCA- -5'
19247 3' -53.5 NC_004684.1 + 40223 0.67 0.831364
Target:  5'- gUGGCCAggUCGCCGccGuAGCUG-GUg -3'
miRNA:   3'- gGCUGGUaaAGCGGCuaC-UCGACgCA- -5'
19247 3' -53.5 NC_004684.1 + 29549 0.67 0.831364
Target:  5'- gCGGCCAUcaCGCUcagcgaGAUGAccGCUGUGUa -3'
miRNA:   3'- gGCUGGUAaaGCGG------CUACU--CGACGCA- -5'
19247 3' -53.5 NC_004684.1 + 34218 0.67 0.831364
Target:  5'- aCGACC---UUGCCGAggucgaGGGCcUGCGUa -3'
miRNA:   3'- gGCUGGuaaAGCGGCUa-----CUCG-ACGCA- -5'
19247 3' -53.5 NC_004684.1 + 12880 0.67 0.822342
Target:  5'- -aGGCCGc--CGCCGggGAGcCUGCGc -3'
miRNA:   3'- ggCUGGUaaaGCGGCuaCUC-GACGCa -5'
19247 3' -53.5 NC_004684.1 + 55823 0.67 0.822342
Target:  5'- gCGAgCAcggggUGCCGGUGAGCggguacUGCGUg -3'
miRNA:   3'- gGCUgGUaaa--GCGGCUACUCG------ACGCA- -5'
19247 3' -53.5 NC_004684.1 + 64924 0.67 0.822342
Target:  5'- gCGACCcagGUggCGgCGGUGAGCgccugGCGg -3'
miRNA:   3'- gGCUGG---UAaaGCgGCUACUCGa----CGCa -5'
19247 3' -53.5 NC_004684.1 + 43726 0.67 0.822342
Target:  5'- gCCGACCAggcCGUCGGUGuacccggucAGCaGCGg -3'
miRNA:   3'- -GGCUGGUaaaGCGGCUAC---------UCGaCGCa -5'
19247 3' -53.5 NC_004684.1 + 59191 0.67 0.822342
Target:  5'- cUCGACCAcg-CGCuUGAUcAGCUGCGc -3'
miRNA:   3'- -GGCUGGUaaaGCG-GCUAcUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 12875 0.67 0.813123
Target:  5'- cUCGuACCcc--CGCCGGUGAGC-GCGg -3'
miRNA:   3'- -GGC-UGGuaaaGCGGCUACUCGaCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.