miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19247 5' -57.4 NC_004684.1 + 53405 0.66 0.709939
Target:  5'- uCCAgguggcCGGGCUGGCC---UGCGCCGcGCg -3'
miRNA:   3'- -GGU------GCUCGACUGGcacGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 16775 0.66 0.709939
Target:  5'- -gAUGAGCgggGACCaGgugcgGCGCGUCGUGUg -3'
miRNA:   3'- ggUGCUCGa--CUGG-Ca----CGCGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 5316 0.66 0.709939
Target:  5'- aCGCGcuGGC-GACCGUGCaGCAgUGggugGCg -3'
miRNA:   3'- gGUGC--UCGaCUGGCACG-CGUgGCa---CG- -5'
19247 5' -57.4 NC_004684.1 + 60525 0.66 0.709939
Target:  5'- aCCGCaGGCUGAUCucGcCGCGCCcgGUGCc -3'
miRNA:   3'- -GGUGcUCGACUGGcaC-GCGUGG--CACG- -5'
19247 5' -57.4 NC_004684.1 + 10023 0.66 0.709939
Target:  5'- gCCGCGcGCcGACCGggaGCGCAUCaucGCc -3'
miRNA:   3'- -GGUGCuCGaCUGGCa--CGCGUGGca-CG- -5'
19247 5' -57.4 NC_004684.1 + 11365 0.66 0.709939
Target:  5'- cCCGCGAGgUG-CCGguggugGCGUccAUCGUGg -3'
miRNA:   3'- -GGUGCUCgACuGGCa-----CGCG--UGGCACg -5'
19247 5' -57.4 NC_004684.1 + 3094 0.66 0.709939
Target:  5'- aCCACGAc--GGCCaggGCGCACUGcGCg -3'
miRNA:   3'- -GGUGCUcgaCUGGca-CGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 2515 0.66 0.709939
Target:  5'- cCCGgGGGCgcGACCGgacaacGCGCACCa--- -3'
miRNA:   3'- -GGUgCUCGa-CUGGCa-----CGCGUGGcacg -5'
19247 5' -57.4 NC_004684.1 + 27329 0.66 0.709939
Target:  5'- aCCGCacGCUGACCaacGaCGagaGCCGUGCg -3'
miRNA:   3'- -GGUGcuCGACUGGca-C-GCg--UGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 3872 0.66 0.699571
Target:  5'- cCCGCGAGCUGcgacGCCaG-GC-CGCCcUGCu -3'
miRNA:   3'- -GGUGCUCGAC----UGG-CaCGcGUGGcACG- -5'
19247 5' -57.4 NC_004684.1 + 51675 0.66 0.699571
Target:  5'- gCCACGAGCcuccagccauuUGACCa-GCGCcggaccuuuACCgGUGCc -3'
miRNA:   3'- -GGUGCUCG-----------ACUGGcaCGCG---------UGG-CACG- -5'
19247 5' -57.4 NC_004684.1 + 251 0.66 0.699571
Target:  5'- aCAcCGAGCUGAUCGccaacagccUGCGCACgCaugGCc -3'
miRNA:   3'- gGU-GCUCGACUGGC---------ACGCGUG-Gca-CG- -5'
19247 5' -57.4 NC_004684.1 + 10757 0.66 0.699571
Target:  5'- -aGCGAGCaGGCaaCGUGCGUGCCc-GCg -3'
miRNA:   3'- ggUGCUCGaCUG--GCACGCGUGGcaCG- -5'
19247 5' -57.4 NC_004684.1 + 18399 0.66 0.699571
Target:  5'- gCACGAccuacuacuucgGCgGcCCGgcggGCGCACCG-GCg -3'
miRNA:   3'- gGUGCU------------CGaCuGGCa---CGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 9592 0.66 0.699571
Target:  5'- uCCGUG-GCUGGgacagcaugcUCGaggaGCGCGCCGUGCa -3'
miRNA:   3'- -GGUGCuCGACU----------GGCa---CGCGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 41889 0.66 0.699571
Target:  5'- cCCGCGAcaugaacgcGCUGGCCGaccgGaCGaCAUCGUGg -3'
miRNA:   3'- -GGUGCU---------CGACUGGCa---C-GC-GUGGCACg -5'
19247 5' -57.4 NC_004684.1 + 63278 0.66 0.699571
Target:  5'- aCCugGAGCc-GCCGgGCGUAuCCcUGCa -3'
miRNA:   3'- -GGugCUCGacUGGCaCGCGU-GGcACG- -5'
19247 5' -57.4 NC_004684.1 + 10342 0.66 0.689142
Target:  5'- gCCAcCGcGCUGguGCCGUgGCcCACCGUGa -3'
miRNA:   3'- -GGU-GCuCGAC--UGGCA-CGcGUGGCACg -5'
19247 5' -57.4 NC_004684.1 + 43638 0.66 0.689142
Target:  5'- cCCACG-GC---CCGaacUGCGCACCGaGCa -3'
miRNA:   3'- -GGUGCuCGacuGGC---ACGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 65187 0.66 0.689142
Target:  5'- aCCAUGuuguccucGGCguagUGGCCGUGCGgCACCucGCg -3'
miRNA:   3'- -GGUGC--------UCG----ACUGGCACGC-GUGGcaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.