Results 1 - 20 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19248 | 3' | -60.6 | NC_004684.1 | + | 23632 | 0.66 | 0.472938 |
Target: 5'- -cGCUGUC-CCGGC-CUUGCUGG-CAc -3' miRNA: 3'- caCGGCGGuGGUCGuGGACGACCuGU- -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 16559 | 0.66 | 0.472938 |
Target: 5'- aUGaCGCCACCGGaguuccugACCcGCUGGGCc -3' miRNA: 3'- cACgGCGGUGGUCg-------UGGaCGACCUGu -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 46953 | 0.66 | 0.472938 |
Target: 5'- -cGCCGCCguGCaCAGCGCCagGCUGa--- -3' miRNA: 3'- caCGGCGG--UG-GUCGUGGa-CGACcugu -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 7901 | 0.66 | 0.472938 |
Target: 5'- cGUGCCcuggugGCCGCCAGCcaGCC-GgUGGAgAa -3' miRNA: 3'- -CACGG------CGGUGGUCG--UGGaCgACCUgU- -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 37196 | 0.66 | 0.472938 |
Target: 5'- -cGCgCGCgGCCAGCugCUGgUGuGCGu -3' miRNA: 3'- caCG-GCGgUGGUCGugGACgACcUGU- -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 25204 | 0.66 | 0.47196 |
Target: 5'- -cGCUGgCACCGGguggcuuCACCggcacGCUGGACGc -3' miRNA: 3'- caCGGCgGUGGUC-------GUGGa----CGACCUGU- -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 14515 | 0.66 | 0.470983 |
Target: 5'- gGUGCaUGCCACCGGCAUguaccggugcaccaaCgaugacggcguaccGCUGGACAc -3' miRNA: 3'- -CACG-GCGGUGGUCGUG---------------Ga-------------CGACCUGU- -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 40794 | 0.66 | 0.467085 |
Target: 5'- -cGCCGCCGCCGGUggcgaacccgcgcacACCgccgcGCgccaGGGCGc -3' miRNA: 3'- caCGGCGGUGGUCG---------------UGGa----CGa---CCUGU- -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 39969 | 0.66 | 0.467085 |
Target: 5'- aUGCCGCCACCAugcggucaaagagauGCGUCUGCgucGGGu- -3' miRNA: 3'- cACGGCGGUGGU---------------CGUGGACGa--CCUgu -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 48044 | 0.66 | 0.463205 |
Target: 5'- -cGCCGCUggAUCAGCGCCUcccGCUcGGcCAc -3' miRNA: 3'- caCGGCGG--UGGUCGUGGA---CGA-CCuGU- -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 25400 | 0.66 | 0.463205 |
Target: 5'- uUGUCGCCAgCGGcCACCgcGC-GGGCAu -3' miRNA: 3'- cACGGCGGUgGUC-GUGGa-CGaCCUGU- -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 14651 | 0.66 | 0.463205 |
Target: 5'- -aGCgGCCACgAcgACCUGgaGGACAg -3' miRNA: 3'- caCGgCGGUGgUcgUGGACgaCCUGU- -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 55670 | 0.66 | 0.463205 |
Target: 5'- -gGCgGCgCACCAGC---UGCUGGACc -3' miRNA: 3'- caCGgCG-GUGGUCGuggACGACCUGu -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 28728 | 0.66 | 0.463205 |
Target: 5'- -gGCgCGUCugCGGCACCgacgugcggUGCgaGGACAa -3' miRNA: 3'- caCG-GCGGugGUCGUGG---------ACGa-CCUGU- -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 65767 | 0.66 | 0.463205 |
Target: 5'- -gGCCGCCGC--GCGCC-GgUGGGCGc -3' miRNA: 3'- caCGGCGGUGguCGUGGaCgACCUGU- -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 15700 | 0.66 | 0.463205 |
Target: 5'- -cGaCGCCACCGGCAUCgUGCUcccGGAg- -3' miRNA: 3'- caCgGCGGUGGUCGUGG-ACGA---CCUgu -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 4419 | 0.66 | 0.463205 |
Target: 5'- -gGCCGCCGgaaCAacGCgcggGCCUGCUGGcGCAg -3' miRNA: 3'- caCGGCGGUg--GU--CG----UGGACGACC-UGU- -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 62488 | 0.66 | 0.46127 |
Target: 5'- gGUGCCGCCgagGCCGGUggcgaccaggccGCCUGagccgccuucaaUGGACc -3' miRNA: 3'- -CACGGCGG---UGGUCG------------UGGACg-----------ACCUGu -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 35168 | 0.66 | 0.460305 |
Target: 5'- -cGCCGCUgucgauaccgaACCGGCucccggacgugccgAUCUGCUGGAa- -3' miRNA: 3'- caCGGCGG-----------UGGUCG--------------UGGACGACCUgu -5' |
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19248 | 3' | -60.6 | NC_004684.1 | + | 28583 | 0.66 | 0.453577 |
Target: 5'- --aCCGCCagGCgGGCACCgccGCUGGAa- -3' miRNA: 3'- cacGGCGG--UGgUCGUGGa--CGACCUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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