miRNA display CGI


Results 1 - 20 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19250 5' -57.3 NC_004684.1 + 35809 0.66 0.656929
Target:  5'- cGGCGAcgguggucauucacgACGCCGCCAGCuucGaCGUa- -3'
miRNA:   3'- uCCGCU---------------UGUGGCGGUCGua-CaGCGag -5'
19250 5' -57.3 NC_004684.1 + 55457 0.66 0.652608
Target:  5'- uGGCGAcCAUgGCCAGCGgacggcccuggcUGUCGgUg -3'
miRNA:   3'- uCCGCUuGUGgCGGUCGU------------ACAGCgAg -5'
19250 5' -57.3 NC_004684.1 + 14480 0.66 0.652608
Target:  5'- -uGCGGccACGCCGCCgugcuGGCcgGaCGCUCc -3'
miRNA:   3'- ucCGCU--UGUGGCGG-----UCGuaCaGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 43221 0.66 0.652608
Target:  5'- uGGGCGGcgGCACCGCCuGCGgacccUGCa- -3'
miRNA:   3'- -UCCGCU--UGUGGCGGuCGUaca--GCGag -5'
19250 5' -57.3 NC_004684.1 + 17829 0.66 0.652608
Target:  5'- cAGGCGAAgGCCacGCCAGCccgaaGUCGg-- -3'
miRNA:   3'- -UCCGCUUgUGG--CGGUCGua---CAGCgag -5'
19250 5' -57.3 NC_004684.1 + 43799 0.66 0.652608
Target:  5'- cGGGUGAuacCACCGgCGGCgGUGuUCGCg- -3'
miRNA:   3'- -UCCGCUu--GUGGCgGUCG-UAC-AGCGag -5'
19250 5' -57.3 NC_004684.1 + 6367 0.66 0.641794
Target:  5'- cGGCGAugGCCugcgcguuGCgCAGCGUGUUGg-- -3'
miRNA:   3'- uCCGCUugUGG--------CG-GUCGUACAGCgag -5'
19250 5' -57.3 NC_004684.1 + 40655 0.66 0.641794
Target:  5'- gGGGCcuGGCcCCGCCAGUcg--CGCUCg -3'
miRNA:   3'- -UCCGc-UUGuGGCGGUCGuacaGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 46408 0.66 0.641794
Target:  5'- uGGuCGGGucCACgGCCAGCAUGUCccgGCg- -3'
miRNA:   3'- uCC-GCUU--GUGgCGGUCGUACAG---CGag -5'
19250 5' -57.3 NC_004684.1 + 42521 0.66 0.641794
Target:  5'- cGGCGcgcuCACCGCCguggucGGCGUGcugacggCGUUCg -3'
miRNA:   3'- uCCGCuu--GUGGCGG------UCGUACa------GCGAG- -5'
19250 5' -57.3 NC_004684.1 + 46874 0.66 0.640712
Target:  5'- cAGGCGAugACGCCGCCuucgggaccauacGGCugaugGUGUCGagUCc -3'
miRNA:   3'- -UCCGCU--UGUGGCGG-------------UCG-----UACAGCg-AG- -5'
19250 5' -57.3 NC_004684.1 + 11986 0.66 0.630972
Target:  5'- cGGCG-GCACCGaCGGCAUGacccCGCa- -3'
miRNA:   3'- uCCGCuUGUGGCgGUCGUACa---GCGag -5'
19250 5' -57.3 NC_004684.1 + 30035 0.66 0.630972
Target:  5'- gAGcGUGAACGCgcgcuCGCCGGUcgGUUGCg- -3'
miRNA:   3'- -UC-CGCUUGUG-----GCGGUCGuaCAGCGag -5'
19250 5' -57.3 NC_004684.1 + 32553 0.66 0.630972
Target:  5'- cGGGCGAugACCuggagauucgGgCGGUcgGcUCGCUCu -3'
miRNA:   3'- -UCCGCUugUGG----------CgGUCGuaC-AGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 6023 0.66 0.630972
Target:  5'- cGGUGGccuuuAgGCCGCCAGCGccUCGCg- -3'
miRNA:   3'- uCCGCU-----UgUGGCGGUCGUacAGCGag -5'
19250 5' -57.3 NC_004684.1 + 22055 0.66 0.630972
Target:  5'- uGGCuGGAgAcccCCGCCGGUGUGcCGUUCa -3'
miRNA:   3'- uCCG-CUUgU---GGCGGUCGUACaGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 60341 0.66 0.630972
Target:  5'- -uGC--ACACCGCCAGCGcGUCGgaCu -3'
miRNA:   3'- ucCGcuUGUGGCGGUCGUaCAGCgaG- -5'
19250 5' -57.3 NC_004684.1 + 57182 0.66 0.630972
Target:  5'- uGGGCaGGCACCuCCAGCGc-UCGCUg -3'
miRNA:   3'- -UCCGcUUGUGGcGGUCGUacAGCGAg -5'
19250 5' -57.3 NC_004684.1 + 50949 0.66 0.630972
Target:  5'- cAGGCGcACGauggugugCGCCAGCAcGUCGUa- -3'
miRNA:   3'- -UCCGCuUGUg-------GCGGUCGUaCAGCGag -5'
19250 5' -57.3 NC_004684.1 + 39443 0.66 0.624478
Target:  5'- cGGCGAcguaccACGgUGCCAGCuccgggcgguagaugGUGUCGCcCa -3'
miRNA:   3'- uCCGCU------UGUgGCGGUCG---------------UACAGCGaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.