miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 3882 0.66 0.481731
Target:  5'- gCGACGCCagGCCGCCcuGcUGGCGCaGGCg -3'
miRNA:   3'- -GUUGCGG--CGGUGGc-CaGCUGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 56811 0.66 0.481731
Target:  5'- -cGCGCCGaaCCAgCCGGaUCGGCGgGGa- -3'
miRNA:   3'- guUGCGGC--GGU-GGCC-AGCUGCgCCga -5'
19254 5' -61.6 NC_004684.1 + 4680 0.66 0.481731
Target:  5'- uGugGCCGaCUACCGcaaGUCGAccccCGUGGCc -3'
miRNA:   3'- gUugCGGC-GGUGGC---CAGCU----GCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 8712 0.66 0.481731
Target:  5'- ---aGCCGCa--CGGUCGACGgGGa- -3'
miRNA:   3'- guugCGGCGgugGCCAGCUGCgCCga -5'
19254 5' -61.6 NC_004684.1 + 42099 0.66 0.481731
Target:  5'- --cCGCCGCCGCCuGGU-GugGCcggaaGGCc -3'
miRNA:   3'- guuGCGGCGGUGG-CCAgCugCG-----CCGa -5'
19254 5' -61.6 NC_004684.1 + 52903 0.66 0.481731
Target:  5'- gAGCGuCCgGCCAgcaCGG-CGGCGUGGCc -3'
miRNA:   3'- gUUGC-GG-CGGUg--GCCaGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 28904 0.66 0.481731
Target:  5'- uGGCGaCCGCCGCUGaUCGAC-CGGaCg -3'
miRNA:   3'- gUUGC-GGCGGUGGCcAGCUGcGCC-Ga -5'
19254 5' -61.6 NC_004684.1 + 14484 0.66 0.481731
Target:  5'- gGugGuuGCCgguaccacGCCGGUCGcCgGUGGCa -3'
miRNA:   3'- gUugCggCGG--------UGGCCAGCuG-CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 6281 0.66 0.481731
Target:  5'- gAGCGCgGCgaacuguaGCCGcGUCGACcggugGCGGCg -3'
miRNA:   3'- gUUGCGgCGg-------UGGC-CAGCUG-----CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 65758 0.66 0.481731
Target:  5'- gGGCGCCGgUAcCCGGUUG-CGcCGGUg -3'
miRNA:   3'- gUUGCGGCgGU-GGCCAGCuGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 63677 0.66 0.481731
Target:  5'- aAGCGuuGaUACCGGcCaGCGCGGCg -3'
miRNA:   3'- gUUGCggCgGUGGCCaGcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 54869 0.66 0.480772
Target:  5'- --uUGCUGCCA-CGGUCGugGCccucacaacgugcGGCa -3'
miRNA:   3'- guuGCGGCGGUgGCCAGCugCG-------------CCGa -5'
19254 5' -61.6 NC_004684.1 + 12346 0.66 0.478857
Target:  5'- aCAACaCCGCCcCCGGUCuaacuggcuuaccgGGgGCGGUg -3'
miRNA:   3'- -GUUGcGGCGGuGGCCAG--------------CUgCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 41832 0.66 0.473136
Target:  5'- aGGCGCUgGCCACCGacgcguacgcguuccUCGGCGUGGUc -3'
miRNA:   3'- gUUGCGG-CGGUGGCc--------------AGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 55417 0.66 0.472185
Target:  5'- --uCGgUGCCGCCGGUCGcgguguGCGCcGCa -3'
miRNA:   3'- guuGCgGCGGUGGCCAGC------UGCGcCGa -5'
19254 5' -61.6 NC_004684.1 + 42921 0.66 0.472185
Target:  5'- gAACGCCGCCAggugauacCCuGaCGGCGCuuguGGCUg -3'
miRNA:   3'- gUUGCGGCGGU--------GGcCaGCUGCG----CCGA- -5'
19254 5' -61.6 NC_004684.1 + 42001 0.66 0.472185
Target:  5'- ---gGCCGCCGCUGu---GCGCGGCg -3'
miRNA:   3'- guugCGGCGGUGGCcagcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 45051 0.66 0.472185
Target:  5'- --cCGCCGCCACCGccuGUaccggGugGCGGg- -3'
miRNA:   3'- guuGCGGCGGUGGC---CAg----CugCGCCga -5'
19254 5' -61.6 NC_004684.1 + 12937 0.66 0.472185
Target:  5'- aCuuCGCCGCCGucggcacccCCGGUgcucccgcCGACcgGCGGCa -3'
miRNA:   3'- -GuuGCGGCGGU---------GGCCA--------GCUG--CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 55302 0.66 0.472185
Target:  5'- gAugGCCGCCGCgCGGgccagcaccUCGucGCGCucGGCg -3'
miRNA:   3'- gUugCGGCGGUG-GCC---------AGC--UGCG--CCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.