miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 3' -55.9 NC_004684.1 + 8598 0.66 0.778129
Target:  5'- cGCGCCgguggccucgaACAAgccCGGuGCACCGGCa- -3'
miRNA:   3'- aCGUGG-----------UGUUau-GCCcUGUGGCCGcc -5'
19256 3' -55.9 NC_004684.1 + 35731 0.66 0.778129
Target:  5'- cGCACCgccgACAGUGCca-GCGucCCGGCGGg -3'
miRNA:   3'- aCGUGG----UGUUAUGcccUGU--GGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 53738 0.66 0.778129
Target:  5'- gUGCGCCACGAgacaccacGCaGG-UGCgCGGCGGc -3'
miRNA:   3'- -ACGUGGUGUUa-------UGcCCuGUG-GCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 15163 0.66 0.778129
Target:  5'- gGCACCACGGccUGaucGACGCCGG-GGa -3'
miRNA:   3'- aCGUGGUGUUauGCc--CUGUGGCCgCC- -5'
19256 3' -55.9 NC_004684.1 + 8012 0.66 0.778129
Target:  5'- cUGUGCCGCcggGCGguuccaGGACACCGuGCGc -3'
miRNA:   3'- -ACGUGGUGuuaUGC------CCUGUGGC-CGCc -5'
19256 3' -55.9 NC_004684.1 + 22057 0.66 0.778129
Target:  5'- aGCGCCaggcACAGUcuggcuacCGGGACACCGcacGCGc -3'
miRNA:   3'- aCGUGG----UGUUAu-------GCCCUGUGGC---CGCc -5'
19256 3' -55.9 NC_004684.1 + 57827 0.66 0.778129
Target:  5'- gGUcgGCCACGuguucGCGGcGCACCGGCu- -3'
miRNA:   3'- aCG--UGGUGUua---UGCCcUGUGGCCGcc -5'
19256 3' -55.9 NC_004684.1 + 44152 0.66 0.778129
Target:  5'- gGCGCuCGCAAUACuGcGGCA-CGGCGa -3'
miRNA:   3'- aCGUG-GUGUUAUGcC-CUGUgGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 39969 0.66 0.768314
Target:  5'- aGCGCCAUccccUGCGcuccGGGCACCuGGuCGGu -3'
miRNA:   3'- aCGUGGUGuu--AUGC----CCUGUGG-CC-GCC- -5'
19256 3' -55.9 NC_004684.1 + 31611 0.66 0.768314
Target:  5'- cUGCGCCACGAUggagcGCGGcGcGCGCUGGg-- -3'
miRNA:   3'- -ACGUGGUGUUA-----UGCC-C-UGUGGCCgcc -5'
19256 3' -55.9 NC_004684.1 + 29291 0.66 0.768314
Target:  5'- gGCACCGCGA-ACuccGACGgCGGUGGu -3'
miRNA:   3'- aCGUGGUGUUaUGcc-CUGUgGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 3639 0.66 0.768314
Target:  5'- cGCGCCACc---UGGGucAUGCCGGuCGGc -3'
miRNA:   3'- aCGUGGUGuuauGCCC--UGUGGCC-GCC- -5'
19256 3' -55.9 NC_004684.1 + 36484 0.66 0.767325
Target:  5'- gGCACCggguucgacaucgGCAAggcCGGGACGCUGaGCcuGGg -3'
miRNA:   3'- aCGUGG-------------UGUUau-GCCCUGUGGC-CG--CC- -5'
19256 3' -55.9 NC_004684.1 + 14539 0.66 0.758365
Target:  5'- gUGCACCaACGAUgacggcguaccGCuGGACACCuGGUGc -3'
miRNA:   3'- -ACGUGG-UGUUA-----------UGcCCUGUGG-CCGCc -5'
19256 3' -55.9 NC_004684.1 + 47619 0.66 0.758365
Target:  5'- uUGuCGCCcCcg-GCGGG-CACCGGCaGGc -3'
miRNA:   3'- -AC-GUGGuGuuaUGCCCuGUGGCCG-CC- -5'
19256 3' -55.9 NC_004684.1 + 8273 0.66 0.758365
Target:  5'- gUGCGCCGCGAccUGCGGcGCuaccaCGGCa- -3'
miRNA:   3'- -ACGUGGUGUU--AUGCCcUGug---GCCGcc -5'
19256 3' -55.9 NC_004684.1 + 7940 0.66 0.758365
Target:  5'- -uCGCCGCcgacCGGcGcACACCGGUGGg -3'
miRNA:   3'- acGUGGUGuuauGCC-C-UGUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 59857 0.66 0.758365
Target:  5'- aGCACCGCGucgAaguugaucagUGGGucacGCGCgCGGCGGc -3'
miRNA:   3'- aCGUGGUGUua-U----------GCCC----UGUG-GCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 48862 0.66 0.755355
Target:  5'- cGCGCCagugcgcgaacgggGCGAUGacCGGGACGCCGaacUGGc -3'
miRNA:   3'- aCGUGG--------------UGUUAU--GCCCUGUGGCc--GCC- -5'
19256 3' -55.9 NC_004684.1 + 61794 0.66 0.752336
Target:  5'- cGCGCCagcucggccccgucgGCAG-GCGGGuCGCCuugcaGGCGGu -3'
miRNA:   3'- aCGUGG---------------UGUUaUGCCCuGUGG-----CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.