miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19297 3' -61.5 NC_004685.1 + 15628 0.66 0.513308
Target:  5'- cCGAGuCGCgacggcgaGCCAUCGCCcGCGGcaUCcCCg -3'
miRNA:   3'- -GCUC-GCGg-------CGGUAGUGG-CGCC--AGcGG- -5'
19297 3' -61.5 NC_004685.1 + 31975 0.66 0.513308
Target:  5'- --cGUGCCGUCGgcgacgaccuUCACCGagcCGGUCGaCCc -3'
miRNA:   3'- gcuCGCGGCGGU----------AGUGGC---GCCAGC-GG- -5'
19297 3' -61.5 NC_004685.1 + 60212 0.66 0.513308
Target:  5'- cCGA-CGCCGCCGacaAUCGCGGgcagCGUg -3'
miRNA:   3'- -GCUcGCGGCGGUag-UGGCGCCa---GCGg -5'
19297 3' -61.5 NC_004685.1 + 51317 0.66 0.513308
Target:  5'- -cAGCGUCGgUGUCugugacGCCGCGGUUGUa -3'
miRNA:   3'- gcUCGCGGCgGUAG------UGGCGCCAGCGg -5'
19297 3' -61.5 NC_004685.1 + 41314 0.66 0.513308
Target:  5'- aCGcAGCGaaCGUCAcguUCACUGCGGUCaGCg -3'
miRNA:   3'- -GC-UCGCg-GCGGU---AGUGGCGCCAG-CGg -5'
19297 3' -61.5 NC_004685.1 + 65045 0.66 0.512329
Target:  5'- uCGA-CGCCGuaggcgaCCAUC-UCGCGGUCggGCCa -3'
miRNA:   3'- -GCUcGCGGC-------GGUAGuGGCGCCAG--CGG- -5'
19297 3' -61.5 NC_004685.1 + 37440 0.66 0.51135
Target:  5'- cCGAcGCgGCCGCguUCAgCGCGGaaccgagaaugcCGCCg -3'
miRNA:   3'- -GCU-CG-CGGCGguAGUgGCGCCa-----------GCGG- -5'
19297 3' -61.5 NC_004685.1 + 15658 0.66 0.503547
Target:  5'- cCGAG-GCuCGCgCGUUGCCGUGGauUCGaCCg -3'
miRNA:   3'- -GCUCgCG-GCG-GUAGUGGCGCC--AGC-GG- -5'
19297 3' -61.5 NC_004685.1 + 9442 0.66 0.503547
Target:  5'- -cGGCGCCGUacggggaGUCACUGUGGacguucgugUGCCg -3'
miRNA:   3'- gcUCGCGGCGg------UAGUGGCGCCa--------GCGG- -5'
19297 3' -61.5 NC_004685.1 + 38789 0.66 0.503547
Target:  5'- -cGGCGguUCGCaCAcCAuCCGCGGUCGCa -3'
miRNA:   3'- gcUCGC--GGCG-GUaGU-GGCGCCAGCGg -5'
19297 3' -61.5 NC_004685.1 + 36269 0.66 0.502575
Target:  5'- gCGAGCagGCCGgUG-CGCUGCGGcgcggcgaucaucUCGCCg -3'
miRNA:   3'- -GCUCG--CGGCgGUaGUGGCGCC-------------AGCGG- -5'
19297 3' -61.5 NC_004685.1 + 60316 0.66 0.502575
Target:  5'- -cAGCGCCGCguUgaagaucagcucgUGCUGCGGccgCGCCg -3'
miRNA:   3'- gcUCGCGGCGguA-------------GUGGCGCCa--GCGG- -5'
19297 3' -61.5 NC_004685.1 + 492 0.66 0.500634
Target:  5'- uGAGCGCagacauGCUgagCACCGCguugacuugcacgaGGUCGUCg -3'
miRNA:   3'- gCUCGCGg-----CGGua-GUGGCG--------------CCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 43856 0.66 0.497729
Target:  5'- --cGCGCCcagcggcaucgucaCCAUCGUCGCGGUCgGCCc -3'
miRNA:   3'- gcuCGCGGc-------------GGUAGUGGCGCCAG-CGG- -5'
19297 3' -61.5 NC_004685.1 + 1905 0.66 0.493867
Target:  5'- cCGuGC-CCGCUGcgGCCGCGGUUGgCg -3'
miRNA:   3'- -GCuCGcGGCGGUagUGGCGCCAGCgG- -5'
19297 3' -61.5 NC_004685.1 + 42567 0.66 0.493867
Target:  5'- aGAGC-CgGCCAUCAgcccacguccuCCGC-GUCGUCa -3'
miRNA:   3'- gCUCGcGgCGGUAGU-----------GGCGcCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 16574 0.66 0.493867
Target:  5'- uGGGCGCUGCCGUCGCCuCaG-CaCCu -3'
miRNA:   3'- gCUCGCGGCGGUAGUGGcGcCaGcGG- -5'
19297 3' -61.5 NC_004685.1 + 59875 0.66 0.493867
Target:  5'- uGuGCGCgGgaCCAccUCGCCGCGG-CgGCCg -3'
miRNA:   3'- gCuCGCGgC--GGU--AGUGGCGCCaG-CGG- -5'
19297 3' -61.5 NC_004685.1 + 55263 0.66 0.49098
Target:  5'- cCGAGCGCuucgcggcggaaccCGUCGUCAUCGagccGUCGUCu -3'
miRNA:   3'- -GCUCGCG--------------GCGGUAGUGGCgc--CAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 29549 0.66 0.484273
Target:  5'- cCGAGgacauCGCCGCCAUgACCGacaacuucCGCCa -3'
miRNA:   3'- -GCUC-----GCGGCGGUAgUGGCgcca----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.