miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19505 3' -60.1 NC_004685.1 + 42507 0.66 0.547892
Target:  5'- aGCCGCCGGugcugACGuguuCGCG-GUGCugGCc -3'
miRNA:   3'- -CGGCGGCU-----UGUc---GCGCuCGCGugCGu -5'
19505 3' -60.1 NC_004685.1 + 2434 0.66 0.547892
Target:  5'- gGCCGCCGGuggccuguucgACGGCGCG-GUccaaCAUGCc -3'
miRNA:   3'- -CGGCGGCU-----------UGUCGCGCuCGc---GUGCGu -5'
19505 3' -60.1 NC_004685.1 + 63011 0.66 0.547892
Target:  5'- aGCUGCC---CGGCGUGGGCGCG-GUg -3'
miRNA:   3'- -CGGCGGcuuGUCGCGCUCGCGUgCGu -5'
19505 3' -60.1 NC_004685.1 + 25556 0.66 0.547892
Target:  5'- aUCGCgGAcuGCAGCGCGguGGUGCGCu-- -3'
miRNA:   3'- cGGCGgCU--UGUCGCGC--UCGCGUGcgu -5'
19505 3' -60.1 NC_004685.1 + 3716 0.66 0.547892
Target:  5'- nGCCGaguaCGGGCuGGCGC-AGCGcCACGUc -3'
miRNA:   3'- -CGGCg---GCUUG-UCGCGcUCGC-GUGCGu -5'
19505 3' -60.1 NC_004685.1 + 68340 0.66 0.547892
Target:  5'- cGCC-CCGggUccguguGUGCGuGCGCcGCGCGg -3'
miRNA:   3'- -CGGcGGCuuGu-----CGCGCuCGCG-UGCGU- -5'
19505 3' -60.1 NC_004685.1 + 52956 0.66 0.547892
Target:  5'- aCCGCCGGACAGCcGCaccGCgGC-CGCc -3'
miRNA:   3'- cGGCGGCUUGUCG-CGcu-CG-CGuGCGu -5'
19505 3' -60.1 NC_004685.1 + 48352 0.66 0.547892
Target:  5'- cCCGUCGcACagGGUGCGGGUGacgaaGCGCAu -3'
miRNA:   3'- cGGCGGCuUG--UCGCGCUCGCg----UGCGU- -5'
19505 3' -60.1 NC_004685.1 + 26221 0.66 0.547892
Target:  5'- -aCGCCGGACuucaGGCGCGcGaGCAgGCGa -3'
miRNA:   3'- cgGCGGCUUG----UCGCGCuCgCGUgCGU- -5'
19505 3' -60.1 NC_004685.1 + 9784 0.66 0.546868
Target:  5'- aGCUGgCGAuggaagacgugacGCuGGCGCuGAGgGCACGCu -3'
miRNA:   3'- -CGGCgGCU-------------UG-UCGCG-CUCgCGUGCGu -5'
19505 3' -60.1 NC_004685.1 + 6540 0.66 0.546868
Target:  5'- -aCGCCG-ACGGC-CGAGCugauccuggagguGCugGCAg -3'
miRNA:   3'- cgGCGGCuUGUCGcGCUCG-------------CGugCGU- -5'
19505 3' -60.1 NC_004685.1 + 666 0.66 0.546868
Target:  5'- gGCgGCCGGgucgGCAGCGCGcauaaacuucggcAGCGUGgGUg -3'
miRNA:   3'- -CGgCGGCU----UGUCGCGC-------------UCGCGUgCGu -5'
19505 3' -60.1 NC_004685.1 + 51434 0.66 0.53768
Target:  5'- uGCUGCgGcauCGGUGCGAGCaccGUGCGCc -3'
miRNA:   3'- -CGGCGgCuu-GUCGCGCUCG---CGUGCGu -5'
19505 3' -60.1 NC_004685.1 + 26533 0.66 0.53768
Target:  5'- cGCCGCCGcACucgguGCGCGucgccaggaucGCGCugGgCGa -3'
miRNA:   3'- -CGGCGGCuUGu----CGCGCu----------CGCGugC-GU- -5'
19505 3' -60.1 NC_004685.1 + 10722 0.66 0.53768
Target:  5'- gGCUGCCaugGAgcauugGCAGCGCGuGCGCGgaGUg -3'
miRNA:   3'- -CGGCGG---CU------UGUCGCGCuCGCGUg-CGu -5'
19505 3' -60.1 NC_004685.1 + 21077 0.66 0.53768
Target:  5'- gGCCGUCGGucuGCAGgGCGuG-GCugGUg -3'
miRNA:   3'- -CGGCGGCU---UGUCgCGCuCgCGugCGu -5'
19505 3' -60.1 NC_004685.1 + 65876 0.66 0.53768
Target:  5'- cGUCGCCcGACgAGaUGCGAGCcaGCACgGCAg -3'
miRNA:   3'- -CGGCGGcUUG-UC-GCGCUCG--CGUG-CGU- -5'
19505 3' -60.1 NC_004685.1 + 67250 0.66 0.53768
Target:  5'- cGCCGUCGAACAG-GCcaccGGCgGC-CGCGu -3'
miRNA:   3'- -CGGCGGCUUGUCgCGc---UCG-CGuGCGU- -5'
19505 3' -60.1 NC_004685.1 + 20503 0.66 0.53768
Target:  5'- aCCGCCGAAgcCAGC-CGcGCGUuggaggaggugGCGCAg -3'
miRNA:   3'- cGGCGGCUU--GUCGcGCuCGCG-----------UGCGU- -5'
19505 3' -60.1 NC_004685.1 + 54451 0.66 0.53768
Target:  5'- aCCGCCGAugaagACAGuCGgGAcCGCcaGCGCAc -3'
miRNA:   3'- cGGCGGCU-----UGUC-GCgCUcGCG--UGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.