Results 1 - 20 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 31950 | 0.66 | 0.542063 |
Target: 5'- cCGCGaCGGCGGguaucccGAGGGCGAuuguUGCg- -3' miRNA: 3'- -GCGCcGCCGCCa------UUCCCGUUu---GCGgg -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 33463 | 0.66 | 0.541029 |
Target: 5'- cCGCGGCgccggggguuaGGCgGGUGAGcugagugaccaccGGCugucCGCCCg -3' miRNA: 3'- -GCGCCG-----------CCG-CCAUUC-------------CCGuuu-GCGGG- -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 3747 | 0.66 | 0.531748 |
Target: 5'- gGCGGCGGCGGacuGGuacgacgagcuGCGugaaAGCGCUg -3' miRNA: 3'- gCGCCGCCGCCauuCC-----------CGU----UUGCGGg -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 14750 | 0.66 | 0.531748 |
Target: 5'- aCGCGGUguaccGGCaGGUGGagaccGGGCAGcACGUCa -3' miRNA: 3'- -GCGCCG-----CCG-CCAUU-----CCCGUU-UGCGGg -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 21145 | 0.66 | 0.531748 |
Target: 5'- aCGCGGCuaagGGUGGUcAGGcGUuguuccGCGCCg -3' miRNA: 3'- -GCGCCG----CCGCCAuUCC-CGuu----UGCGGg -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 15676 | 0.66 | 0.521505 |
Target: 5'- cCGCGauGCGGUGGccc-GGCuGACGCCg -3' miRNA: 3'- -GCGC--CGCCGCCauucCCGuUUGCGGg -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 33636 | 0.66 | 0.511339 |
Target: 5'- cCGcCGGUGaUGGUGAGGGCGGcuGCGgCg -3' miRNA: 3'- -GC-GCCGCcGCCAUUCCCGUU--UGCgGg -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 47805 | 0.66 | 0.511339 |
Target: 5'- gGCGGCuacgggcgcuuuGGCGc-GGGGGCGGAUGUCa -3' miRNA: 3'- gCGCCG------------CCGCcaUUCCCGUUUGCGGg -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 3842 | 0.66 | 0.511339 |
Target: 5'- aCGCGcUGGCcgGGUGGGuGGCGGAaccguugaaacUGCCCg -3' miRNA: 3'- -GCGCcGCCG--CCAUUC-CCGUUU-----------GCGGG- -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 38700 | 0.66 | 0.501257 |
Target: 5'- gGgGGUGGU-GUAGGuGGCGAACuCCCc -3' miRNA: 3'- gCgCCGCCGcCAUUC-CCGUUUGcGGG- -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 32540 | 0.66 | 0.501257 |
Target: 5'- uCGUGGUGcccGUcagGGUGAGGGUgacagAGACGCCa -3' miRNA: 3'- -GCGCCGC---CG---CCAUUCCCG-----UUUGCGGg -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 22085 | 0.67 | 0.485311 |
Target: 5'- gGCGGCcagGGCGGcaaaAAGGGCAccaacucgucgagcaGugGCgCg -3' miRNA: 3'- gCGCCG---CCGCCa---UUCCCGU---------------UugCGgG- -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 21987 | 0.67 | 0.475468 |
Target: 5'- gCGCuGGCGGUgccaaggcguauuccGGUGAcGGCAAggacgGCGCCg -3' miRNA: 3'- -GCG-CCGCCG---------------CCAUUcCCGUU-----UGCGGg -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 36436 | 0.67 | 0.471559 |
Target: 5'- -aUGGCauGGCGGUGaaggcccauGGuGGCAAACGUCUu -3' miRNA: 3'- gcGCCG--CCGCCAU---------UC-CCGUUUGCGGG- -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 36654 | 0.67 | 0.471559 |
Target: 5'- aGCGGUGGa-GUuGGaGGCGuugcgugaagagAACGCCCg -3' miRNA: 3'- gCGCCGCCgcCAuUC-CCGU------------UUGCGGG- -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 37697 | 0.67 | 0.468638 |
Target: 5'- cCGUGGUGGCauccguaauuccgaGGUGuaccggaccGGGGCGucguggAGCGCCa -3' miRNA: 3'- -GCGCCGCCG--------------CCAU---------UCCCGU------UUGCGGg -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 49057 | 0.67 | 0.468638 |
Target: 5'- gGCGGCagcgaggacgcccuGGUGGUcagcGAGGGagagcgcgagcCAAACGCCa -3' miRNA: 3'- gCGCCG--------------CCGCCA----UUCCC-----------GUUUGCGGg -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 5373 | 0.67 | 0.461858 |
Target: 5'- uCGuCGGCGuugaaguccaGCGGUcGGGGCAccauguuCGUCCa -3' miRNA: 3'- -GC-GCCGC----------CGCCAuUCCCGUuu-----GCGGG- -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 30970 | 0.67 | 0.461858 |
Target: 5'- aGCGGCGGCGaucaGUGgaagcAGGGCcuucACGCg- -3' miRNA: 3'- gCGCCGCCGC----CAU-----UCCCGuu--UGCGgg -5' |
|||||||
19651 | 3' | -59.3 | NC_004686.1 | + | 41193 | 0.67 | 0.456088 |
Target: 5'- uCGCGcUGGUGGaacucccggagaaguUGGGGGaGGACGCCCc -3' miRNA: 3'- -GCGCcGCCGCC---------------AUUCCCgUUUGCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home