miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19742 3' -66.6 NC_004687.1 + 40379 0.66 0.469454
Target:  5'- cGGCUgucGGCgauauugagcauccaCCGCugCUCGGCaCCCAGc -3'
miRNA:   3'- cCCGG---UCGa--------------GGCGugGGGCCG-GGGUC- -5'
19742 3' -66.6 NC_004687.1 + 75410 0.66 0.468582
Target:  5'- cGGCgCGGCagCCGcCGCCCgGGCgUCGGu -3'
miRNA:   3'- cCCG-GUCGa-GGC-GUGGGgCCGgGGUC- -5'
19742 3' -66.6 NC_004687.1 + 39256 0.66 0.468582
Target:  5'- uGGcCCAGCacCUGCaguccACCCUGGCCCUg- -3'
miRNA:   3'- cCC-GGUCGa-GGCG-----UGGGGCCGGGGuc -5'
19742 3' -66.6 NC_004687.1 + 141196 0.66 0.468582
Target:  5'- cGGCCAGCUucaUCGaCGCUCCGaccaCCCAGc -3'
miRNA:   3'- cCCGGUCGA---GGC-GUGGGGCcg--GGGUC- -5'
19742 3' -66.6 NC_004687.1 + 84875 0.66 0.468582
Target:  5'- cGGGCUGGCgcucaaucugCCGgGCCuuGagguugcgguaGCCCCGGa -3'
miRNA:   3'- -CCCGGUCGa---------GGCgUGGggC-----------CGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 92284 0.66 0.467712
Target:  5'- cGGCCAGCgcgCUGuCGCCagCGGCCaugagagCCAGu -3'
miRNA:   3'- cCCGGUCGa--GGC-GUGGg-GCCGG-------GGUC- -5'
19742 3' -66.6 NC_004687.1 + 116354 0.66 0.466842
Target:  5'- uGGCCgcguagaAGCUCgccggggCGUugCCCGGCCCg-- -3'
miRNA:   3'- cCCGG-------UCGAG-------GCGugGGGCCGGGguc -5'
19742 3' -66.6 NC_004687.1 + 36579 0.66 0.459915
Target:  5'- uGGGCCAGCaggaaCUGCugCauGGCCagCAGg -3'
miRNA:   3'- -CCCGGUCGa----GGCGugGggCCGGg-GUC- -5'
19742 3' -66.6 NC_004687.1 + 97071 0.66 0.459915
Target:  5'- gGGGUCacccuucgGGgUCCGCACCaggucguugaCCGGCaccgCCCAGg -3'
miRNA:   3'- -CCCGG--------UCgAGGCGUGG----------GGCCG----GGGUC- -5'
19742 3' -66.6 NC_004687.1 + 154847 0.66 0.459915
Target:  5'- --aUCAGCUCgGCGCCCUGGauggCCAGg -3'
miRNA:   3'- cccGGUCGAGgCGUGGGGCCgg--GGUC- -5'
19742 3' -66.6 NC_004687.1 + 57136 0.66 0.459915
Target:  5'- cGGCCuGCccgaUCCGCACUCgGGCCaUguGg -3'
miRNA:   3'- cCCGGuCG----AGGCGUGGGgCCGG-GguC- -5'
19742 3' -66.6 NC_004687.1 + 93088 0.66 0.459915
Target:  5'- uGGGCCGGUaCgUGCGCCUCGcGCCgCGc -3'
miRNA:   3'- -CCCGGUCGaG-GCGUGGGGC-CGGgGUc -5'
19742 3' -66.6 NC_004687.1 + 60956 0.66 0.459915
Target:  5'- cGGCCAGCgcgCCGUucgaggccgACCUCGGCgaCGGc -3'
miRNA:   3'- cCCGGUCGa--GGCG---------UGGGGCCGggGUC- -5'
19742 3' -66.6 NC_004687.1 + 54207 0.66 0.459915
Target:  5'- cGGUCGGCuaUCgGCGCggguacuuccagCCUGGCCCUGGg -3'
miRNA:   3'- cCCGGUCG--AGgCGUG------------GGGCCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 3661 0.66 0.459915
Target:  5'- uGGCCAuggCCGCGaucgUCCUGGCCaCCGGg -3'
miRNA:   3'- cCCGGUcgaGGCGU----GGGGCCGG-GGUC- -5'
19742 3' -66.6 NC_004687.1 + 87402 0.66 0.459915
Target:  5'- -cGCCAGaUCU-UGCCCCGGCCCgGGa -3'
miRNA:   3'- ccCGGUCgAGGcGUGGGGCCGGGgUC- -5'
19742 3' -66.6 NC_004687.1 + 63233 0.66 0.459915
Target:  5'- aGGGCCAGgUggcaucgacgCCGCAgCCCgaCGGCaCCUGGa -3'
miRNA:   3'- -CCCGGUCgA----------GGCGU-GGG--GCCG-GGGUC- -5'
19742 3' -66.6 NC_004687.1 + 133171 0.66 0.459053
Target:  5'- uGGCCAGCaugggcuUCCGCAaucucgaauggUUCUGGCgCCGGg -3'
miRNA:   3'- cCCGGUCG-------AGGCGU-----------GGGGCCGgGGUC- -5'
19742 3' -66.6 NC_004687.1 + 20261 0.66 0.454756
Target:  5'- uGGCCAacccGCUcuccgucgugauguaCCaGCACCUCGucGCCCCAGa -3'
miRNA:   3'- cCCGGU----CGA---------------GG-CGUGGGGC--CGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 103254 0.66 0.451334
Target:  5'- cGGcGaCCAGgUCCGCuACgCCCGcGCCCUg- -3'
miRNA:   3'- -CC-C-GGUCgAGGCG-UG-GGGC-CGGGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.