miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19742 5' -57.5 NC_004687.1 + 39554 0.66 0.86252
Target:  5'- cGCcggGCCGGGcaACGCCccGGCgAGCUUCu -3'
miRNA:   3'- aCGa--CGGCCCa-UGUGGu-CUG-UCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 48018 0.66 0.86252
Target:  5'- -aCUGCuCGGGUgAUGCCgaGGugGGCUUCu -3'
miRNA:   3'- acGACG-GCCCA-UGUGG--UCugUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 44728 0.66 0.86252
Target:  5'- gGCccGCauGGUGCGgCAGGCAGCgcgaCCa -3'
miRNA:   3'- aCGa-CGgcCCAUGUgGUCUGUCGa---GG- -5'
19742 5' -57.5 NC_004687.1 + 59358 0.66 0.86252
Target:  5'- aGC-GCUGGGUggACGCUcacaaGGAgAGCUUCg -3'
miRNA:   3'- aCGaCGGCCCA--UGUGG-----UCUgUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 30361 0.66 0.86252
Target:  5'- aGgUG-CGGGUGCAggUAGGCuGCUCCg -3'
miRNA:   3'- aCgACgGCCCAUGUg-GUCUGuCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 88797 0.66 0.861765
Target:  5'- cGCUccaCCGGGUGCcagacaccacguuGCCGGugGuCUCCu -3'
miRNA:   3'- aCGAc--GGCCCAUG-------------UGGUCugUcGAGG- -5'
19742 5' -57.5 NC_004687.1 + 26538 0.66 0.861765
Target:  5'- cGCgGUCGGGccgACGuucuucgUCGGuCAGCUCCg -3'
miRNA:   3'- aCGaCGGCCCa--UGU-------GGUCuGUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 148649 0.66 0.857962
Target:  5'- cUGCUGCaCGccucgcuggaccgcuGGUACGCCAGccuCAGCa-- -3'
miRNA:   3'- -ACGACG-GC---------------CCAUGUGGUCu--GUCGagg -5'
19742 5' -57.5 NC_004687.1 + 9516 0.66 0.854883
Target:  5'- cGCUGUCGGcaGCgGCCAG-CGGCgccCCg -3'
miRNA:   3'- aCGACGGCCcaUG-UGGUCuGUCGa--GG- -5'
19742 5' -57.5 NC_004687.1 + 153141 0.66 0.854883
Target:  5'- cGCcGCCGGGcgcggUGCGgCAGGcCAGCaCCu -3'
miRNA:   3'- aCGaCGGCCC-----AUGUgGUCU-GUCGaGG- -5'
19742 5' -57.5 NC_004687.1 + 105092 0.66 0.854883
Target:  5'- cGCggGCCGGGccggucucgccUGCggcggGCCAGuCGGCUuCCa -3'
miRNA:   3'- aCGa-CGGCCC-----------AUG-----UGGUCuGUCGA-GG- -5'
19742 5' -57.5 NC_004687.1 + 71844 0.66 0.854883
Target:  5'- -uCUGCCGGGcugACAacCCGcGCGGCaUCCa -3'
miRNA:   3'- acGACGGCCCa--UGU--GGUcUGUCG-AGG- -5'
19742 5' -57.5 NC_004687.1 + 9007 0.66 0.847047
Target:  5'- cGCUGgCGGcGgugACACUggGGGCagcacgGGCUCCg -3'
miRNA:   3'- aCGACgGCC-Ca--UGUGG--UCUG------UCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 28608 0.66 0.847047
Target:  5'- aGC-GCaCGGccaACACCugguuuGACGGCUCCg -3'
miRNA:   3'- aCGaCG-GCCca-UGUGGu-----CUGUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 135405 0.66 0.847047
Target:  5'- aGCUGUCGGGccGCACC----AGCUCg -3'
miRNA:   3'- aCGACGGCCCa-UGUGGucugUCGAGg -5'
19742 5' -57.5 NC_004687.1 + 127476 0.66 0.847047
Target:  5'- -cUUGUCGGcGgACACCAGGCGGCg-- -3'
miRNA:   3'- acGACGGCC-CaUGUGGUCUGUCGagg -5'
19742 5' -57.5 NC_004687.1 + 4194 0.66 0.839019
Target:  5'- cGgUGgCGGGccgaGCugCGGcACAGCUCUg -3'
miRNA:   3'- aCgACgGCCCa---UGugGUC-UGUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 45840 0.66 0.839019
Target:  5'- cGC-GCCGGacGUggcgcGCGCCGGACGGUcgagCCg -3'
miRNA:   3'- aCGaCGGCC--CA-----UGUGGUCUGUCGa---GG- -5'
19742 5' -57.5 NC_004687.1 + 79598 0.66 0.839019
Target:  5'- cGCgccCCGGGUcaagggcgaACGCCGGAC--CUCCg -3'
miRNA:   3'- aCGac-GGCCCA---------UGUGGUCUGucGAGG- -5'
19742 5' -57.5 NC_004687.1 + 67561 0.66 0.839019
Target:  5'- ---cGCCaGGUaguuGCGCCAGAuCGGCgUCCa -3'
miRNA:   3'- acgaCGGcCCA----UGUGGUCU-GUCG-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.