miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19744 3' -60.5 NC_004687.1 + 97123 0.66 0.722491
Target:  5'- uGGGUCGGCgG-GUCGUacgGC-GGGCCg- -3'
miRNA:   3'- -UCCAGCCGgUgCAGUA---CGaCCCGGag -5'
19744 3' -60.5 NC_004687.1 + 122469 0.66 0.722491
Target:  5'- cGGcUCGGCUccuguucgGCGUCA-GCUGccGCCUCg -3'
miRNA:   3'- uCC-AGCCGG--------UGCAGUaCGACc-CGGAG- -5'
19744 3' -60.5 NC_004687.1 + 48439 0.66 0.712785
Target:  5'- -cGcCGGUgCGCGUggCGUGCUGGGCC-Cg -3'
miRNA:   3'- ucCaGCCG-GUGCA--GUACGACCCGGaG- -5'
19744 3' -60.5 NC_004687.1 + 75269 0.66 0.712785
Target:  5'- cAGGUCGGCCuuGgCA-GCcaGGGCCa- -3'
miRNA:   3'- -UCCAGCCGGugCaGUaCGa-CCCGGag -5'
19744 3' -60.5 NC_004687.1 + 106441 0.66 0.712785
Target:  5'- -cGUCGGCCAUGa---GCUGggcacGGCCUCg -3'
miRNA:   3'- ucCAGCCGGUGCaguaCGAC-----CCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 27160 0.66 0.712785
Target:  5'- cGGGcCGGUgCGCGUgGUG-UGGGCCg- -3'
miRNA:   3'- -UCCaGCCG-GUGCAgUACgACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 6954 0.66 0.712785
Target:  5'- cGGUguccUGGUCGCGaUCAUgGCUGucaucuGGCCUCg -3'
miRNA:   3'- uCCA----GCCGGUGC-AGUA-CGAC------CCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 21866 0.66 0.703015
Target:  5'- cGGUCGGCgccagCGCGagAUGCU-GGCCa- -3'
miRNA:   3'- uCCAGCCG-----GUGCagUACGAcCCGGag -5'
19744 3' -60.5 NC_004687.1 + 108046 0.66 0.693187
Target:  5'- cGGUCGGgCAUGUCGcUGaUGGaGCCgUCg -3'
miRNA:   3'- uCCAGCCgGUGCAGU-ACgACC-CGG-AG- -5'
19744 3' -60.5 NC_004687.1 + 71502 0.66 0.693187
Target:  5'- gAGGUCcucaagcGCCAgGUCGcGCUGGGCg-- -3'
miRNA:   3'- -UCCAGc------CGGUgCAGUaCGACCCGgag -5'
19744 3' -60.5 NC_004687.1 + 4429 0.66 0.693187
Target:  5'- aGGGUCGaggaucGUgCGCGUaaccUGCUGGGCCUg -3'
miRNA:   3'- -UCCAGC------CG-GUGCAgu--ACGACCCGGAg -5'
19744 3' -60.5 NC_004687.1 + 137413 0.66 0.693187
Target:  5'- gAGGUCGGCaGCGgccaGCaGGGCCa- -3'
miRNA:   3'- -UCCAGCCGgUGCaguaCGaCCCGGag -5'
19744 3' -60.5 NC_004687.1 + 100475 0.66 0.693187
Target:  5'- uGGUCcgcugGGCCACGUCcuugGUGgagucaUGGGCCg- -3'
miRNA:   3'- uCCAG-----CCGGUGCAG----UACg-----ACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 35624 0.66 0.68331
Target:  5'- cGGUCGGUgcCGUCGccgggGUcgUGGGCCUUg -3'
miRNA:   3'- uCCAGCCGguGCAGUa----CG--ACCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 132117 0.66 0.673393
Target:  5'- uGGUCGGgacgaCCACGUCGaGCUucuGGGCUc- -3'
miRNA:   3'- uCCAGCC-----GGUGCAGUaCGA---CCCGGag -5'
19744 3' -60.5 NC_004687.1 + 51179 0.67 0.663444
Target:  5'- aAGGUCGGCgGCaUCcagcGcCUGGGCCa- -3'
miRNA:   3'- -UCCAGCCGgUGcAGua--C-GACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 92059 0.67 0.653471
Target:  5'- cGGUaGGCCGCGcCGcGCUGcaguGCCUCa -3'
miRNA:   3'- uCCAgCCGGUGCaGUaCGACc---CGGAG- -5'
19744 3' -60.5 NC_004687.1 + 88329 0.67 0.647479
Target:  5'- gGGGUCccagccgcgaugccaGGUCGCGUCGuacaucUGCUcGGGCgUCu -3'
miRNA:   3'- -UCCAG---------------CCGGUGCAGU------ACGA-CCCGgAG- -5'
19744 3' -60.5 NC_004687.1 + 148505 0.67 0.643482
Target:  5'- gAGGaCGGCCA-GUCGcUGCUGGaGCUg- -3'
miRNA:   3'- -UCCaGCCGGUgCAGU-ACGACC-CGGag -5'
19744 3' -60.5 NC_004687.1 + 111185 0.67 0.639483
Target:  5'- cGGGUUGGUCGCGcugccugccgcacCAUGC-GGGCCg- -3'
miRNA:   3'- -UCCAGCCGGUGCa------------GUACGaCCCGGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.