miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19753 3' -62.1 NC_004687.1 + 3253 0.66 0.691326
Target:  5'- aCUGCGGCAGCUU-GGCGUgcacGGCCa-- -3'
miRNA:   3'- gGGCGCUGUCGGAgCCGCG----CUGGcua -5'
19753 3' -62.1 NC_004687.1 + 123987 0.66 0.691326
Target:  5'- aCCCGCG-C-GCCcgUCGGUGUGggucagcaGCCGAUg -3'
miRNA:   3'- -GGGCGCuGuCGG--AGCCGCGC--------UGGCUA- -5'
19753 3' -62.1 NC_004687.1 + 104865 0.66 0.691326
Target:  5'- gUCGuCGGauGCCUUGGCgaaGCGACCGAg -3'
miRNA:   3'- gGGC-GCUguCGGAGCCG---CGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 133060 0.66 0.691326
Target:  5'- aCUCuuGugGGUCUCGcGCGCG-CCGAa -3'
miRNA:   3'- -GGGcgCugUCGGAGC-CGCGCuGGCUa -5'
19753 3' -62.1 NC_004687.1 + 11992 0.66 0.691326
Target:  5'- aCCGCGAacgucgccCCUCGGCGaUGauGCCGAUg -3'
miRNA:   3'- gGGCGCUguc-----GGAGCCGC-GC--UGGCUA- -5'
19753 3' -62.1 NC_004687.1 + 11878 0.66 0.691326
Target:  5'- aCCCuCGACgacgccaaGGCCUgGGCGCaGACCc-- -3'
miRNA:   3'- -GGGcGCUG--------UCGGAgCCGCG-CUGGcua -5'
19753 3' -62.1 NC_004687.1 + 15928 0.66 0.690364
Target:  5'- gCCGuUGACGGUUUgcacggugucgucCGGCGCGACCa-- -3'
miRNA:   3'- gGGC-GCUGUCGGA-------------GCCGCGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 73949 0.66 0.681689
Target:  5'- aCCCgGCGAUccucggcauGGUCggCGGCGCGgugGCCGGa -3'
miRNA:   3'- -GGG-CGCUG---------UCGGa-GCCGCGC---UGGCUa -5'
19753 3' -62.1 NC_004687.1 + 120804 0.66 0.681689
Target:  5'- cUCCaGCGGC-GCCggugcgggCGGaggaGCGACCGAg -3'
miRNA:   3'- -GGG-CGCUGuCGGa-------GCCg---CGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 6990 0.66 0.681689
Target:  5'- gCCCGCGugucCGGCCcggCGGCGCc-CCGu- -3'
miRNA:   3'- -GGGCGCu---GUCGGa--GCCGCGcuGGCua -5'
19753 3' -62.1 NC_004687.1 + 81750 0.66 0.681689
Target:  5'- aCCGCGcGCuGCCacggCGGgGCGuCCGGg -3'
miRNA:   3'- gGGCGC-UGuCGGa---GCCgCGCuGGCUa -5'
19753 3' -62.1 NC_004687.1 + 69664 0.66 0.681689
Target:  5'- aCCgGCGGCAGCUUCaagcuGuCGCuGGCCGGa -3'
miRNA:   3'- -GGgCGCUGUCGGAGc----C-GCG-CUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 30258 0.66 0.681689
Target:  5'- aCUC-CGACGGCCUCaacaagcaGGCGCucGACCGc- -3'
miRNA:   3'- -GGGcGCUGUCGGAG--------CCGCG--CUGGCua -5'
19753 3' -62.1 NC_004687.1 + 66530 0.66 0.681689
Target:  5'- gCCGCG-CAGCCa----GCGACCGGUg -3'
miRNA:   3'- gGGCGCuGUCGGagccgCGCUGGCUA- -5'
19753 3' -62.1 NC_004687.1 + 88630 0.66 0.680723
Target:  5'- gCUCuCGuCGGCCUCGGUggccgagGCGAUCGAc -3'
miRNA:   3'- -GGGcGCuGUCGGAGCCG-------CGCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 56397 0.66 0.672015
Target:  5'- aUCGuCGGCAGUCgUCGGUGCGGgUGGg -3'
miRNA:   3'- gGGC-GCUGUCGG-AGCCGCGCUgGCUa -5'
19753 3' -62.1 NC_004687.1 + 109965 0.66 0.672015
Target:  5'- aCCUgGCGGCAGguaUCGGgGCGACCu-- -3'
miRNA:   3'- -GGG-CGCUGUCgg-AGCCgCGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 125380 0.66 0.672015
Target:  5'- gCCCGUG-CAGCg-UGGCcaaguuccGCGACCGGUu -3'
miRNA:   3'- -GGGCGCuGUCGgaGCCG--------CGCUGGCUA- -5'
19753 3' -62.1 NC_004687.1 + 115556 0.66 0.672015
Target:  5'- aUCGcCGACAGCCggGaGCGCaaGACCGGc -3'
miRNA:   3'- gGGC-GCUGUCGGagC-CGCG--CUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 137789 0.66 0.672015
Target:  5'- aCCGUGGuCGuGCUggCGGCGUGGCCGc- -3'
miRNA:   3'- gGGCGCU-GU-CGGa-GCCGCGCUGGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.