miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 71193 0.7 0.90287
Target:  5'- -aUUCUGCGC-ACacGACCAAAUGCCg -3'
miRNA:   3'- caAAGGCGCGcUGcaCUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 70191 0.69 0.944149
Target:  5'- aGUUUgCGCGCGAgcagaaaauuaucuaCGgcgcCCAAGCGCCg -3'
miRNA:   3'- -CAAAgGCGCGCU---------------GCacu-GGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 69472 0.74 0.720334
Target:  5'- ---aCCgGCGCGACGacacgccgggUGACaCAAGCGCCa -3'
miRNA:   3'- caaaGG-CGCGCUGC----------ACUG-GUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 67821 0.68 0.959237
Target:  5'- ---gCUGCGCGGC---GCCAAACGCUu -3'
miRNA:   3'- caaaGGCGCGCUGcacUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 65968 0.66 0.990327
Target:  5'- ---cCCGCGCcgaagaaGGCGcuuucGCCGAACGCCc -3'
miRNA:   3'- caaaGGCGCG-------CUGCac---UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 65299 0.67 0.98178
Target:  5'- -----gGCGCGACGcgcugagUGACCGuugcuugGGCGCCg -3'
miRNA:   3'- caaaggCGCGCUGC-------ACUGGU-------UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 65259 0.69 0.926917
Target:  5'- uGUUUCgGCGCgcaauuguacGACGUGAUgGAcgcccaccGCGCCa -3'
miRNA:   3'- -CAAAGgCGCG----------CUGCACUGgUU--------UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 63689 0.66 0.990455
Target:  5'- ---aCCGCcCGGCucgcUGcGCCAAACGCCg -3'
miRNA:   3'- caaaGGCGcGCUGc---AC-UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 61986 0.67 0.977698
Target:  5'- ---gCCGCuGCG-CGUGGCCAauuggGACAUg -3'
miRNA:   3'- caaaGGCG-CGCuGCACUGGU-----UUGUGg -5'
21186 3' -51.3 NC_004778.3 + 61785 0.66 0.987619
Target:  5'- -gUUCUGCGCG-CGUcgcuggugGGCCAAcCACa -3'
miRNA:   3'- caAAGGCGCGCuGCA--------CUGGUUuGUGg -5'
21186 3' -51.3 NC_004778.3 + 61660 0.71 0.88221
Target:  5'- ---gCCGCGCGcAUGcugGGCCAGcCGCCg -3'
miRNA:   3'- caaaGGCGCGC-UGCa--CUGGUUuGUGG- -5'
21186 3' -51.3 NC_004778.3 + 61374 0.69 0.942274
Target:  5'- ---gCCgGCGCGuCGUcGCUGAGCGCCa -3'
miRNA:   3'- caaaGG-CGCGCuGCAcUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 59604 0.67 0.975157
Target:  5'- ---gCCGCGCcACuUGGCCGAAaACCg -3'
miRNA:   3'- caaaGGCGCGcUGcACUGGUUUgUGG- -5'
21186 3' -51.3 NC_004778.3 + 57923 0.69 0.942274
Target:  5'- -cUUCCGC-CGACacccUGGCCA-ACGCCu -3'
miRNA:   3'- caAAGGCGcGCUGc---ACUGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 57488 0.69 0.926917
Target:  5'- ---gCCGCGCGACGgaaaaGCCGAcaugGCGCg -3'
miRNA:   3'- caaaGGCGCGCUGCac---UGGUU----UGUGg -5'
21186 3' -51.3 NC_004778.3 + 57056 0.66 0.985976
Target:  5'- -gUUCgGUGUcACGcUGACCAGgaauGCGCCg -3'
miRNA:   3'- caAAGgCGCGcUGC-ACUGGUU----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 56993 0.71 0.88221
Target:  5'- ---cCUGUGCGGCG-GGCCAGGCgaguuuGCCg -3'
miRNA:   3'- caaaGGCGCGCUGCaCUGGUUUG------UGG- -5'
21186 3' -51.3 NC_004778.3 + 56917 0.67 0.982196
Target:  5'- --gUCCGCGCuGC-UGGCgCAAACugGCCg -3'
miRNA:   3'- caaAGGCGCGcUGcACUG-GUUUG--UGG- -5'
21186 3' -51.3 NC_004778.3 + 55995 0.68 0.959237
Target:  5'- aGUggcgCCGCGuUGGCGUcGAUUAGACACa -3'
miRNA:   3'- -CAaa--GGCGC-GCUGCA-CUGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 55277 0.72 0.818032
Target:  5'- -gUUCCGCGCagcgccagcacguuCGUGACCGAGCAa- -3'
miRNA:   3'- caAAGGCGCGcu------------GCACUGGUUUGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.