miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21206 3' -56.9 NC_004778.3 + 64660 0.66 0.877546
Target:  5'- cCGUGCGCuuuCaaCGGCGCGGgCCaCACAu -3'
miRNA:   3'- -GCAUGUGu--GcaGCUGCGCC-GGcGUGU- -5'
21206 3' -56.9 NC_004778.3 + 40815 0.66 0.877546
Target:  5'- aCGUcaaagACGCGCa--GACGCuGCUGCACAu -3'
miRNA:   3'- -GCA-----UGUGUGcagCUGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 39209 0.66 0.877546
Target:  5'- uGUGCACguGCGUCaGCGCGGa-GCAgGg -3'
miRNA:   3'- gCAUGUG--UGCAGcUGCGCCggCGUgU- -5'
21206 3' -56.9 NC_004778.3 + 82378 0.66 0.877546
Target:  5'- uGUAguCAUGUCGAUgggaGUGGCCgGCAUu -3'
miRNA:   3'- gCAUguGUGCAGCUG----CGCCGG-CGUGu -5'
21206 3' -56.9 NC_004778.3 + 105198 0.66 0.877546
Target:  5'- uGUGgACaaACG-CGGCGCcGUCGCACAa -3'
miRNA:   3'- gCAUgUG--UGCaGCUGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 112410 0.66 0.876834
Target:  5'- aGgcgGCACGuaguaaucaucuuCGcUCGACGCGGgCCGCAg- -3'
miRNA:   3'- gCa--UGUGU-------------GC-AGCUGCGCC-GGCGUgu -5'
21206 3' -56.9 NC_004778.3 + 27881 0.66 0.870327
Target:  5'- uGUACGCgGCGgcgagugUGugGCGGCCaGCGa- -3'
miRNA:   3'- gCAUGUG-UGCa------GCugCGCCGG-CGUgu -5'
21206 3' -56.9 NC_004778.3 + 56116 0.66 0.870327
Target:  5'- uGUAUucuuuUACGUCGAaauugGCGGUCGUGCGc -3'
miRNA:   3'- gCAUGu----GUGCAGCUg----CGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 61362 0.66 0.870327
Target:  5'- uGUGCGgACGgcgcCGGCGCGucGUCGCugAg -3'
miRNA:   3'- gCAUGUgUGCa---GCUGCGC--CGGCGugU- -5'
21206 3' -56.9 NC_004778.3 + 56620 0.66 0.870327
Target:  5'- ----aACACcaCGACGCGGCUGCcCAa -3'
miRNA:   3'- gcaugUGUGcaGCUGCGCCGGCGuGU- -5'
21206 3' -56.9 NC_004778.3 + 82465 0.66 0.870327
Target:  5'- ----aGCGCGUCGGCGUGagcGCCgGCGCu -3'
miRNA:   3'- gcaugUGUGCAGCUGCGC---CGG-CGUGu -5'
21206 3' -56.9 NC_004778.3 + 24263 0.66 0.870327
Target:  5'- cCGUACucgaaaaaGCGCgGUCGGCGCuGaCGCACGu -3'
miRNA:   3'- -GCAUG--------UGUG-CAGCUGCGcCgGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 1624 0.66 0.870327
Target:  5'- --aACACACGUUG-CGCuuGCUGCGCu -3'
miRNA:   3'- gcaUGUGUGCAGCuGCGc-CGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 38304 0.66 0.870327
Target:  5'- --cGCGCACG-CGAcCGCGcGCCGaGCAc -3'
miRNA:   3'- gcaUGUGUGCaGCU-GCGC-CGGCgUGU- -5'
21206 3' -56.9 NC_004778.3 + 90314 0.66 0.869594
Target:  5'- uGUACauguuACGCGUCGgguuguaauuaagGCGCGGCaugaacaagaGCACGu -3'
miRNA:   3'- gCAUG-----UGUGCAGC-------------UGCGCCGg---------CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 112191 0.66 0.869594
Target:  5'- -cUGCACuuCGuucUCGGCgcccucgcgcauaGCGGCCGCGCGg -3'
miRNA:   3'- gcAUGUGu-GC---AGCUG-------------CGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 117465 0.66 0.862898
Target:  5'- -cUGC-CACGUUGACGaUGGUCGCGg- -3'
miRNA:   3'- gcAUGuGUGCAGCUGC-GCCGGCGUgu -5'
21206 3' -56.9 NC_004778.3 + 38940 0.66 0.862898
Target:  5'- gCGUGCGgaucgGCGUgGuCGCcGCCGCGCAc -3'
miRNA:   3'- -GCAUGUg----UGCAgCuGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 19482 0.66 0.862898
Target:  5'- aCGUAauggGCGCGcCGACGUgcaaauGGuuGCGCAc -3'
miRNA:   3'- -GCAUg---UGUGCaGCUGCG------CCggCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 20362 0.66 0.862898
Target:  5'- uGUGCugcaACGCGUCGGuuuuaGCcaaGGCCGCAUc -3'
miRNA:   3'- gCAUG----UGUGCAGCUg----CG---CCGGCGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.