miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21220 3' -52 NC_004778.3 + 44945 0.66 0.983008
Target:  5'- cCGCG-CGCGCCCGAuuuuuAUAacuacauaacuuacaACGCCu- -3'
miRNA:   3'- uGUGCaGCGCGGGUUu----UAU---------------UGCGGcg -5'
21220 3' -52 NC_004778.3 + 65464 0.66 0.982402
Target:  5'- aGCAgGUCGuUGCCCGAuucugugcaaacguUGGCGCgGUg -3'
miRNA:   3'- -UGUgCAGC-GCGGGUUuu------------AUUGCGgCG- -5'
21220 3' -52 NC_004778.3 + 116948 0.66 0.982196
Target:  5'- --uUGUCGacgGCCCAGcgu--CGCCGCa -3'
miRNA:   3'- uguGCAGCg--CGGGUUuuauuGCGGCG- -5'
21220 3' -52 NC_004778.3 + 29185 0.66 0.982196
Target:  5'- cACGgGUCGuCGCUCGGcagccAAUcGCGCaCGCg -3'
miRNA:   3'- -UGUgCAGC-GCGGGUU-----UUAuUGCG-GCG- -5'
21220 3' -52 NC_004778.3 + 89298 0.66 0.982196
Target:  5'- aGCACGUcCGCGUCCGuaggAACGUa-- -3'
miRNA:   3'- -UGUGCA-GCGCGGGUuuuaUUGCGgcg -5'
21220 3' -52 NC_004778.3 + 32522 0.66 0.982196
Target:  5'- uCAUG-CGCGCUCAGcuc-GgGCCGCg -3'
miRNA:   3'- uGUGCaGCGCGGGUUuuauUgCGGCG- -5'
21220 3' -52 NC_004778.3 + 106461 0.66 0.982196
Target:  5'- aGCGCGcugCGCGCgCAAAAcgcgcAACuauugGCCGCg -3'
miRNA:   3'- -UGUGCa--GCGCGgGUUUUa----UUG-----CGGCG- -5'
21220 3' -52 NC_004778.3 + 127551 0.66 0.981989
Target:  5'- aGCGCuuguaagGUUGCGUCCAuGAUGgaACGCCa- -3'
miRNA:   3'- -UGUG-------CAGCGCGGGUuUUAU--UGCGGcg -5'
21220 3' -52 NC_004778.3 + 62920 0.66 0.981989
Target:  5'- aACACccuGUCGCGCauggaCAGucgcagcAGUAGCGCCa- -3'
miRNA:   3'- -UGUG---CAGCGCGg----GUU-------UUAUUGCGGcg -5'
21220 3' -52 NC_004778.3 + 48055 0.66 0.98178
Target:  5'- aACugGccCGCuaGCCCAAAGagcuccucguCGCCGCa -3'
miRNA:   3'- -UGugCa-GCG--CGGGUUUUauu-------GCGGCG- -5'
21220 3' -52 NC_004778.3 + 27103 0.66 0.980041
Target:  5'- gACACG-CGCGUCCAAAAauucgGAUcCCGg -3'
miRNA:   3'- -UGUGCaGCGCGGGUUUUa----UUGcGGCg -5'
21220 3' -52 NC_004778.3 + 38582 0.66 0.980041
Target:  5'- cGCGCaaCGCGUCCAcuAUGuuccgcaaaGCGCCGg -3'
miRNA:   3'- -UGUGcaGCGCGGGUuuUAU---------UGCGGCg -5'
21220 3' -52 NC_004778.3 + 30271 0.66 0.980041
Target:  5'- gGCAUGUUGCgcaaguuuacGCCCAuc--AACGCCauGCg -3'
miRNA:   3'- -UGUGCAGCG----------CGGGUuuuaUUGCGG--CG- -5'
21220 3' -52 NC_004778.3 + 36403 0.66 0.980041
Target:  5'- cCGCGUUG-GCgCCAAAAa---GCCGCg -3'
miRNA:   3'- uGUGCAGCgCG-GGUUUUauugCGGCG- -5'
21220 3' -52 NC_004778.3 + 101872 0.66 0.980041
Target:  5'- -aACGUCGUacgccGCgCAuuGUAcaGCGCCGUa -3'
miRNA:   3'- ugUGCAGCG-----CGgGUuuUAU--UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 15678 0.66 0.980041
Target:  5'- aACACGaccaacaaCGUGCUCGAcGAUGgcGCGCUGCu -3'
miRNA:   3'- -UGUGCa-------GCGCGGGUU-UUAU--UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 106140 0.66 0.980041
Target:  5'- gGCACcUCGUGCCCGuuuc--CGCCcgGCa -3'
miRNA:   3'- -UGUGcAGCGCGGGUuuuauuGCGG--CG- -5'
21220 3' -52 NC_004778.3 + 45575 0.66 0.980041
Target:  5'- cGCACGUaGCGCUCcucc-AGCGCCugGCg -3'
miRNA:   3'- -UGUGCAgCGCGGGuuuuaUUGCGG--CG- -5'
21220 3' -52 NC_004778.3 + 14664 0.66 0.979816
Target:  5'- uCAUGUUGCGUC-------ACGCCGCa -3'
miRNA:   3'- uGUGCAGCGCGGguuuuauUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 93086 0.66 0.978658
Target:  5'- gUugGUCGCGCUgCAAAAuccauuaucgcaagcUAAauugcuCGCCGCg -3'
miRNA:   3'- uGugCAGCGCGG-GUUUU---------------AUU------GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.