miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21299 5' -56.5 NC_004778.3 + 38453 0.66 0.865036
Target:  5'- cGGCGCGcGGUCgCGUGCG--CGCuGGCGCa -3'
miRNA:   3'- -CCGCGU-UCAG-GCGUGUugGCG-UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 86600 0.66 0.865036
Target:  5'- aGCGCGuacauGUauaugCUGCGCAACaCGuCGGCGCg -3'
miRNA:   3'- cCGCGUu----CA-----GGCGUGUUG-GC-GUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 51430 0.66 0.865036
Target:  5'- gGGCGCAuGUCCaGCAaagaCGCAGgAUu -3'
miRNA:   3'- -CCGCGUuCAGG-CGUguugGCGUCgUG- -5'
21299 5' -56.5 NC_004778.3 + 38141 0.66 0.865036
Target:  5'- aGCGCAGGcCCGCugcGCCGCucGaCACc -3'
miRNA:   3'- cCGCGUUCaGGCGuguUGGCGu-C-GUG- -5'
21299 5' -56.5 NC_004778.3 + 25670 0.66 0.865036
Target:  5'- cGGCGUguGGGUCaacgGCACGcuacaauccgccGCCGUcGCGCa -3'
miRNA:   3'- -CCGCG--UUCAGg---CGUGU------------UGGCGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 129453 0.66 0.865036
Target:  5'- cGGCGC--GUCCGCggcguACAGCgC-CAGCAUu -3'
miRNA:   3'- -CCGCGuuCAGGCG-----UGUUG-GcGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 40539 0.66 0.864272
Target:  5'- cGGCGCucGUuucccagCCaGCACGACaauuGCAGCAa -3'
miRNA:   3'- -CCGCGuuCA-------GG-CGUGUUGg---CGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 15449 0.66 0.864272
Target:  5'- aGCGCcgccUCCGCGCGACCacgccaaagugcuGCcGCGCa -3'
miRNA:   3'- cCGCGuuc-AGGCGUGUUGG-------------CGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 94849 0.66 0.864272
Target:  5'- cGCGCAcgcucgcGGUUCaGCGCGAa-GCAGUACg -3'
miRNA:   3'- cCGCGU-------UCAGG-CGUGUUggCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 75928 0.66 0.864272
Target:  5'- aGGC-CGuGUuuGCGCAcaugcuuGCCGCcAGCGCc -3'
miRNA:   3'- -CCGcGUuCAggCGUGU-------UGGCG-UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 38304 0.66 0.857305
Target:  5'- cGCGCAcgcGaCCGCGCG-CCG-AGCACu -3'
miRNA:   3'- cCGCGUu--CaGGCGUGUuGGCgUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 125954 0.66 0.857305
Target:  5'- cGCGUucagGAGgaaaaggCgGCGgAGCUGCAGCGCa -3'
miRNA:   3'- cCGCG----UUCa------GgCGUgUUGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 98362 0.66 0.857305
Target:  5'- cGCGCA---CCGCGCccGGgCGCAGCAa -3'
miRNA:   3'- cCGCGUucaGGCGUG--UUgGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 124632 0.66 0.857305
Target:  5'- gGGCGCGGGccuuaUCGCGCcuauaaauaaGGCCGCaccgaacugguaAGCACa -3'
miRNA:   3'- -CCGCGUUCa----GGCGUG----------UUGGCG------------UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 17224 0.66 0.856521
Target:  5'- uGCGCGAGUUCGUggaggaaACGgGCCGCuuuuuucacAGCGCc -3'
miRNA:   3'- cCGCGUUCAGGCG-------UGU-UGGCG---------UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 101075 0.66 0.849366
Target:  5'- gGGCGU--GUCCGCAUggaacgAGCCGUacaagGGCAa -3'
miRNA:   3'- -CCGCGuuCAGGCGUG------UUGGCG-----UCGUg -5'
21299 5' -56.5 NC_004778.3 + 90945 0.66 0.849366
Target:  5'- uGGCGUAAGUCuUGCcuaaACcguGACCGcCGGCAa -3'
miRNA:   3'- -CCGCGUUCAG-GCG----UG---UUGGC-GUCGUg -5'
21299 5' -56.5 NC_004778.3 + 33231 0.66 0.849366
Target:  5'- cGGCaGCGGG-CCGCuGC-ACCGUuGCGCc -3'
miRNA:   3'- -CCG-CGUUCaGGCG-UGuUGGCGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 129299 0.66 0.849366
Target:  5'- uGGCGCuguacgCCGCGgAcgcGCCGCAGUu- -3'
miRNA:   3'- -CCGCGuuca--GGCGUgU---UGGCGUCGug -5'
21299 5' -56.5 NC_004778.3 + 81451 0.66 0.849366
Target:  5'- aGGgGCAA-UCCGCGCcGCCGU-GCGu -3'
miRNA:   3'- -CCgCGUUcAGGCGUGuUGGCGuCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.