miRNA display CGI


Results 1 - 20 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 5' -63.1 NC_004812.1 + 71079 0.66 0.618228
Target:  5'- cGGCGcGGGGCGUucggcgaccggugCCUCCucgguuucggucggaGgCGCGGGCg -3'
miRNA:   3'- -UCGUaUCCCGUA-------------GGGGG---------------CgGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 83261 0.66 0.615297
Target:  5'- aGGCGUcggccGGGGCG-CCgCUCGCCGCacGCg -3'
miRNA:   3'- -UCGUA-----UCCCGUaGG-GGGCGGCGccCG- -5'
21373 5' -63.1 NC_004812.1 + 61828 0.66 0.615297
Target:  5'- cGCGU-GGGCccaCUCCGgguggaCGCGGGCg -3'
miRNA:   3'- uCGUAuCCCGuagGGGGCg-----GCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 148690 0.66 0.615297
Target:  5'- cGCGccGGcGCGcccgcagCCCCCGacacCUGCGGGCg -3'
miRNA:   3'- uCGUauCC-CGUa------GGGGGC----GGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 117362 0.66 0.615297
Target:  5'- cGCgGUGGGGCGgccgCgCCCgGCaGCGcGGCg -3'
miRNA:   3'- uCG-UAUCCCGUa---G-GGGgCGgCGC-CCG- -5'
21373 5' -63.1 NC_004812.1 + 132047 0.66 0.615297
Target:  5'- cGCcgGcGGCAacuucuacaucUCCCCggaGCUGCGGGUg -3'
miRNA:   3'- uCGuaUcCCGU-----------AGGGGg--CGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 7718 0.66 0.615297
Target:  5'- cGCGgcGGGgGUCUCCgCGCC--GGGCg -3'
miRNA:   3'- uCGUauCCCgUAGGGG-GCGGcgCCCG- -5'
21373 5' -63.1 NC_004812.1 + 148263 0.66 0.615297
Target:  5'- cGCgGUGGGGCGgccgCgCCCgGCaGCGcGGCg -3'
miRNA:   3'- uCG-UAUCCCGUa---G-GGGgCGgCGC-CCG- -5'
21373 5' -63.1 NC_004812.1 + 38619 0.66 0.615297
Target:  5'- cGCGgcGGGgGUCUCCgCGCC--GGGCg -3'
miRNA:   3'- uCGUauCCCgUAGGGG-GCGGcgCCCG- -5'
21373 5' -63.1 NC_004812.1 + 21151 0.66 0.615297
Target:  5'- cGCGgcGGGgGUCUCggcgUGCCGCGGGa -3'
miRNA:   3'- uCGUauCCCgUAGGGg---GCGGCGCCCg -5'
21373 5' -63.1 NC_004812.1 + 740 0.66 0.615297
Target:  5'- cGGCGggggugGGGGCGgcgcgacccucUUCCCCGUCugaGGGCc -3'
miRNA:   3'- -UCGUa-----UCCCGU-----------AGGGGGCGGcg-CCCG- -5'
21373 5' -63.1 NC_004812.1 + 30106 0.66 0.615297
Target:  5'- cGGCGUGGGGCugcggggcgcacGUCCCgCaGCCccCGGGg -3'
miRNA:   3'- -UCGUAUCCCG------------UAGGGgG-CGGc-GCCCg -5'
21373 5' -63.1 NC_004812.1 + 27653 0.66 0.615297
Target:  5'- cGCc--GGGCccgaCCCCCGCgGCGGcugGCg -3'
miRNA:   3'- uCGuauCCCGua--GGGGGCGgCGCC---CG- -5'
21373 5' -63.1 NC_004812.1 + 153161 0.66 0.615297
Target:  5'- cGCc--GGGCccgaCCCCCGCgGCGGcugGCg -3'
miRNA:   3'- uCGuauCCCGua--GGGGGCGgCGCC---CG- -5'
21373 5' -63.1 NC_004812.1 + 136480 0.66 0.615297
Target:  5'- cGGCc-GGGGCccgguccgcUCCCCCGCgcgccgcugCGCGcGGCg -3'
miRNA:   3'- -UCGuaUCCCGu--------AGGGGGCG---------GCGC-CCG- -5'
21373 5' -63.1 NC_004812.1 + 107414 0.66 0.615297
Target:  5'- cGGCGgguGcGGCcaggCCCaCCgGCCGCGcGGCg -3'
miRNA:   3'- -UCGUau-C-CCGua--GGG-GG-CGGCGC-CCG- -5'
21373 5' -63.1 NC_004812.1 + 31641 0.66 0.615297
Target:  5'- cGGCGggggugGGGGCGgcgcgacccucUUCCCCGUCugaGGGCc -3'
miRNA:   3'- -UCGUa-----UCCCGU-----------AGGGGGCGGcg-CCCG- -5'
21373 5' -63.1 NC_004812.1 + 16240 0.66 0.615297
Target:  5'- cGGCGuUGGGGCugagguagGUCa-CCGCCGCGGcCa -3'
miRNA:   3'- -UCGU-AUCCCG--------UAGggGGCGGCGCCcG- -5'
21373 5' -63.1 NC_004812.1 + 47389 0.66 0.615297
Target:  5'- uGCA---GGCccUCgCCCCGCCG-GGGCa -3'
miRNA:   3'- uCGUaucCCGu-AG-GGGGCGGCgCCCG- -5'
21373 5' -63.1 NC_004812.1 + 84110 0.66 0.615297
Target:  5'- cGGCGgcGGcGCGcCCCCCGaCCcCGaGGCg -3'
miRNA:   3'- -UCGUauCC-CGUaGGGGGC-GGcGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.