miRNA display CGI


Results 1 - 20 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 100276 0.65 0.911816
Target:  5'- aCGCCuCCGGGuucucggaggcggcGCgCGCgCGCGCGCuGCGCg -3'
miRNA:   3'- -GCGG-GGCUC--------------UG-GUG-GUGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 68445 0.66 0.910027
Target:  5'- aCGCCCCGGGgucGCUcaugucgucuggaaaGCCGCGCccgGgAACGCu -3'
miRNA:   3'- -GCGGGGCUC---UGG---------------UGGUGUG---UgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 68196 0.66 0.90761
Target:  5'- gCGCgCCgGAcGCCcgGCCGCGCGCGGC-Cg -3'
miRNA:   3'- -GCG-GGgCUcUGG--UGGUGUGUGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 106267 0.66 0.90761
Target:  5'- uCGUgCCGAGgcgccuGCCgAUCGCGCACAGgGCc -3'
miRNA:   3'- -GCGgGGCUC------UGG-UGGUGUGUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 152361 0.66 0.90761
Target:  5'- gCGCCau--GGCCACCACGCuCGAgACc -3'
miRNA:   3'- -GCGGggcuCUGGUGGUGUGuGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 13980 0.66 0.90761
Target:  5'- gGCCCCGGcGGCCAggagcgaguCCG-ACACGAgGCu -3'
miRNA:   3'- gCGGGGCU-CUGGU---------GGUgUGUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 71935 0.66 0.90761
Target:  5'- gGCCCCGAGcggguccaGCC-CCaACAacCACAGCGu -3'
miRNA:   3'- gCGGGGCUC--------UGGuGG-UGU--GUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 119355 0.66 0.90761
Target:  5'- cCGCCCagcugGuGGCCAaCACGCuCAACGCc -3'
miRNA:   3'- -GCGGGg----CuCUGGUgGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 31664 0.66 0.90761
Target:  5'- gGgCCgGGGACaGCCGCugGgGGCGCa -3'
miRNA:   3'- gCgGGgCUCUGgUGGUGugUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 74660 0.66 0.90761
Target:  5'- aCGCCCUGcGGACCACgUGC-CGCGcCGCc -3'
miRNA:   3'- -GCGGGGC-UCUGGUG-GUGuGUGUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 148678 0.66 0.90761
Target:  5'- gCGCCCCc---CgGCCGCGC-CGGCGCg -3'
miRNA:   3'- -GCGGGGcucuGgUGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 143233 0.66 0.90761
Target:  5'- gCGCCUCGAgGugCACaGCAaGCAGCAg -3'
miRNA:   3'- -GCGGGGCU-CugGUGgUGUgUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 81409 0.66 0.90761
Target:  5'- cCGCCCUgcggGAGGCgcuCGCgGCACACGagcggcagGCGCg -3'
miRNA:   3'- -GCGGGG----CUCUG---GUGgUGUGUGU--------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 55521 0.66 0.90761
Target:  5'- uGCCgCGuGGCCgugcGCCACGCG--GCGCg -3'
miRNA:   3'- gCGGgGCuCUGG----UGGUGUGUguUGUG- -5'
21374 3' -56.4 NC_004812.1 + 82533 0.66 0.90761
Target:  5'- gGCCCCGGGAggCGCCGC-C-CGugGCc -3'
miRNA:   3'- gCGGGGCUCUg-GUGGUGuGuGUugUG- -5'
21374 3' -56.4 NC_004812.1 + 35062 0.66 0.90761
Target:  5'- uGCCgCGc-GCCACCAgcCGCGCGACGa -3'
miRNA:   3'- gCGGgGCucUGGUGGU--GUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 121460 0.66 0.90761
Target:  5'- gCGCCau--GGCCACCACGCuCGAgACc -3'
miRNA:   3'- -GCGGggcuCUGGUGGUGUGuGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 29471 0.66 0.907
Target:  5'- gGCCgCgCGGGACC-CgCGCGCACGgucccucGCGCg -3'
miRNA:   3'- gCGG-G-GCUCUGGuG-GUGUGUGU-------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 154979 0.66 0.907
Target:  5'- gGCCgCgCGGGACC-CgCGCGCACGgucccucGCGCg -3'
miRNA:   3'- gCGG-G-GCUCUGGuG-GUGUGUGU-------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 114761 0.66 0.907
Target:  5'- -cUCCCGggacguugguuggGGACCGCCGCggccAUGCAGCACc -3'
miRNA:   3'- gcGGGGC-------------UCUGGUGGUG----UGUGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.