miRNA display CGI


Results 1 - 20 of 466 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 5' -69 NC_004812.1 + 116593 0.66 0.365144
Target:  5'- cCGGC-CCGCC----GCGGGCCGCCg- -3'
miRNA:   3'- -GUCGaGGCGGgggcCGCCCGGCGGag -5'
21374 5' -69 NC_004812.1 + 134026 0.66 0.365144
Target:  5'- gGGCUCCgaGCCCgacucugagCCGGaaacCGaGGCCGaCCUCg -3'
miRNA:   3'- gUCGAGG--CGGG---------GGCC----GC-CCGGC-GGAG- -5'
21374 5' -69 NC_004812.1 + 39398 0.66 0.365144
Target:  5'- gCGGCcggCgGCCgCCCGaGCcGGCUGCCUUu -3'
miRNA:   3'- -GUCGa--GgCGG-GGGC-CGcCCGGCGGAG- -5'
21374 5' -69 NC_004812.1 + 43843 0.66 0.365144
Target:  5'- gCGGCUCgcggCGCCgacguccgggCgCGGCGGcGCCGCCg- -3'
miRNA:   3'- -GUCGAG----GCGG----------GgGCCGCC-CGGCGGag -5'
21374 5' -69 NC_004812.1 + 46508 0.66 0.365144
Target:  5'- --uCUCCcgcGCCCCCcgGGgGGGCCcacgggGCCUCu -3'
miRNA:   3'- gucGAGG---CGGGGG--CCgCCCGG------CGGAG- -5'
21374 5' -69 NC_004812.1 + 27174 0.66 0.365144
Target:  5'- -cGCgccgugCCGCCgCCGcGCGGccccGCCGCCg- -3'
miRNA:   3'- guCGa-----GGCGGgGGC-CGCC----CGGCGGag -5'
21374 5' -69 NC_004812.1 + 107199 0.66 0.365144
Target:  5'- gCGGC-CCgggGCCaCgGcGCGGGCCGCCUg -3'
miRNA:   3'- -GUCGaGG---CGGgGgC-CGCCCGGCGGAg -5'
21374 5' -69 NC_004812.1 + 112754 0.66 0.365144
Target:  5'- gCGGCgccgCCGCgCCCGGacuCGGcGCCGCg-- -3'
miRNA:   3'- -GUCGa---GGCGgGGGCC---GCC-CGGCGgag -5'
21374 5' -69 NC_004812.1 + 135547 0.66 0.365144
Target:  5'- --cCUCCGCCccgacgucagCCCGGCGGagaucGUCGCgCUCa -3'
miRNA:   3'- gucGAGGCGG----------GGGCCGCC-----CGGCG-GAG- -5'
21374 5' -69 NC_004812.1 + 144225 0.66 0.365144
Target:  5'- uCGGCUCuuCGCCCUcccggccgcgCGGcCGGGCgCGCCc- -3'
miRNA:   3'- -GUCGAG--GCGGGG----------GCC-GCCCG-GCGGag -5'
21374 5' -69 NC_004812.1 + 8497 0.66 0.365144
Target:  5'- gCGGCcggCgGCCgCCCGaGCcGGCUGCCUUu -3'
miRNA:   3'- -GUCGa--GgCGG-GGGC-CGcCCGGCGGAG- -5'
21374 5' -69 NC_004812.1 + 32016 0.66 0.360722
Target:  5'- gGGCcgaaccggCCGcCCCCCGGgGGcuccaggcccgcgauGaCCGCCUCg -3'
miRNA:   3'- gUCGa-------GGC-GGGGGCCgCC---------------C-GGCGGAG- -5'
21374 5' -69 NC_004812.1 + 108528 0.66 0.357794
Target:  5'- gCGGCggCCGCCgaguacgcgCCCGGCGagucGCUGCgCUCg -3'
miRNA:   3'- -GUCGa-GGCGG---------GGGCCGCc---CGGCG-GAG- -5'
21374 5' -69 NC_004812.1 + 92435 0.66 0.357794
Target:  5'- cCGGCccccgCCGCCcuCCCGcGCGGaGCcCGCCg- -3'
miRNA:   3'- -GUCGa----GGCGG--GGGC-CGCC-CG-GCGGag -5'
21374 5' -69 NC_004812.1 + 155174 0.66 0.357794
Target:  5'- cCGGCccUCgCGgCCCCGGCcccuccccGcGGCCGCCgUCg -3'
miRNA:   3'- -GUCG--AG-GCgGGGGCCG--------C-CCGGCGG-AG- -5'
21374 5' -69 NC_004812.1 + 25162 0.66 0.357794
Target:  5'- gAGCcgccggUCGCCCCCGcGCuccgGGGCgGCgUCg -3'
miRNA:   3'- gUCGa-----GGCGGGGGC-CG----CCCGgCGgAG- -5'
21374 5' -69 NC_004812.1 + 10788 0.66 0.357794
Target:  5'- cCGGcCUUCG-CUCCGGCGGGgCCGCacguCUCc -3'
miRNA:   3'- -GUC-GAGGCgGGGGCCGCCC-GGCG----GAG- -5'
21374 5' -69 NC_004812.1 + 29666 0.66 0.357794
Target:  5'- cCGGCccUCgCGgCCCCGGCcccuccccGcGGCCGCCgUCg -3'
miRNA:   3'- -GUCG--AG-GCgGGGGCCG--------C-CCGGCGG-AG- -5'
21374 5' -69 NC_004812.1 + 72011 0.66 0.357794
Target:  5'- gGGCcgUCGCggcgagCCCCGGUGGGUCGCa-- -3'
miRNA:   3'- gUCGa-GGCG------GGGGCCGCCCGGCGgag -5'
21374 5' -69 NC_004812.1 + 36248 0.66 0.357794
Target:  5'- cCGGCcgCgCGCCCCC-GCGGGuuGCa-- -3'
miRNA:   3'- -GUCGa-G-GCGGGGGcCGCCCggCGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.