Results 1 - 20 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21375 | 5' | -68.3 | NC_004812.1 | + | 19724 | 0.66 | 0.414832 |
Target: 5'- aCCCgUCgCCCCCCUCCUcGUCCGg-- -3' miRNA: 3'- -GGGgGGgGGGGGGGGGAaCGGGUgac -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 84756 | 0.66 | 0.414832 |
Target: 5'- gCCgaCCCCCaUCCCCCggGCCCGgaGa -3' miRNA: 3'- gGGggGGGGG-GGGGGGaaCGGGUgaC- -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 143773 | 0.66 | 0.414832 |
Target: 5'- uCCUCCCgCgCCCCaucggCCCUUccccGCCCACUc -3' miRNA: 3'- -GGGGGGgGgGGGG-----GGGAA----CGGGUGAc -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 117764 | 0.66 | 0.414032 |
Target: 5'- gCCCCCCCggacgcgCCCCCCggCCgcGCCgGCg- -3' miRNA: 3'- gGGGGGGG-------GGGGGG--GGaaCGGgUGac -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 395 | 0.66 | 0.40687 |
Target: 5'- uCUCUCCCCCCCgUCCCUcucCCCAg-- -3' miRNA: 3'- -GGGGGGGGGGGgGGGGAac-GGGUgac -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 6160 | 0.66 | 0.40687 |
Target: 5'- uUCCgCCCUCUCUCCCC--GCCC-CUGu -3' miRNA: 3'- -GGGgGGGGGGGGGGGGaaCGGGuGAC- -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 125903 | 0.66 | 0.40687 |
Target: 5'- uCUCUCCCCCCCgUCCCUcucCCCAg-- -3' miRNA: 3'- -GGGGGGGGGGGgGGGGAac-GGGUgac -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 122388 | 0.66 | 0.40687 |
Target: 5'- gCCCCUCgggCCCCUCCCCUgGCUC-CUc -3' miRNA: 3'- gGGGGGG---GGGGGGGGGAaCGGGuGAc -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 105010 | 0.66 | 0.40687 |
Target: 5'- gCgCCCCUCgCgCCCCgcggUGCCgACUGa -3' miRNA: 3'- gGgGGGGGGgGgGGGGa---ACGGgUGAC- -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 79679 | 0.66 | 0.40687 |
Target: 5'- gCCCCCgCCCaCCUCgCCUCggggUGCUC-CUGg -3' miRNA: 3'- -GGGGG-GGG-GGGG-GGGGa---ACGGGuGAC- -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 131669 | 0.66 | 0.40687 |
Target: 5'- uUCCgCCCUCUCUCCCC--GCCC-CUGu -3' miRNA: 3'- -GGGgGGGGGGGGGGGGaaCGGGuGAC- -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 153289 | 0.66 | 0.40687 |
Target: 5'- gCCCCUCgggCCCCUCCCCUgGCUC-CUc -3' miRNA: 3'- gGGGGGG---GGGGGGGGGAaCGGGuGAc -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 75983 | 0.66 | 0.40608 |
Target: 5'- uCCCCgCCCCucuccaccgcggaCCCCCCaCCgaGCCCcCa- -3' miRNA: 3'- -GGGG-GGGG-------------GGGGGG-GGaaCGGGuGac -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 58856 | 0.66 | 0.40608 |
Target: 5'- uUCCCCCaCCacaCCCCCaCCUucuuuccccagcuUGCCgcCGCUGu -3' miRNA: 3'- -GGGGGG-GGg--GGGGG-GGA-------------ACGG--GUGAC- -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 1332 | 0.66 | 0.399005 |
Target: 5'- gCgCCCCgCCCCUCCCCgguuuggcGUCCGCc- -3' miRNA: 3'- -GgGGGGgGGGGGGGGGaa------CGGGUGac -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 1586 | 0.66 | 0.399005 |
Target: 5'- uCCCCCCCgcacggcuCCCCgCCUCCgggcGcCCCGCg- -3' miRNA: 3'- -GGGGGGG--------GGGG-GGGGGaa--C-GGGUGac -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 85121 | 0.66 | 0.399005 |
Target: 5'- gCCCCUgcugCCCCUgcugCCCCUgcGCCCGCa- -3' miRNA: 3'- gGGGGG----GGGGG----GGGGGaaCGGGUGac -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 127094 | 0.66 | 0.399005 |
Target: 5'- uCCCCCCCgcacggcuCCCCgCCUCCgggcGcCCCGCg- -3' miRNA: 3'- -GGGGGGG--------GGGG-GGGGGaa--C-GGGUGac -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 126840 | 0.66 | 0.399005 |
Target: 5'- gCgCCCCgCCCCUCCCCgguuuggcGUCCGCc- -3' miRNA: 3'- -GgGGGGgGGGGGGGGGaa------CGGGUGac -5' |
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21375 | 5' | -68.3 | NC_004812.1 | + | 116406 | 0.66 | 0.399005 |
Target: 5'- aCCCCCgCgCagagCCCCCgcgGCCCGCg- -3' miRNA: 3'- gGGGGGgGgGg---GGGGGaa-CGGGUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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