miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21375 5' -68.3 NC_004812.1 + 19724 0.66 0.414832
Target:  5'- aCCCgUCgCCCCCCUCCUcGUCCGg-- -3'
miRNA:   3'- -GGGgGGgGGGGGGGGGAaCGGGUgac -5'
21375 5' -68.3 NC_004812.1 + 84756 0.66 0.414832
Target:  5'- gCCgaCCCCCaUCCCCCggGCCCGgaGa -3'
miRNA:   3'- gGGggGGGGG-GGGGGGaaCGGGUgaC- -5'
21375 5' -68.3 NC_004812.1 + 143773 0.66 0.414832
Target:  5'- uCCUCCCgCgCCCCaucggCCCUUccccGCCCACUc -3'
miRNA:   3'- -GGGGGGgGgGGGG-----GGGAA----CGGGUGAc -5'
21375 5' -68.3 NC_004812.1 + 117764 0.66 0.414032
Target:  5'- gCCCCCCCggacgcgCCCCCCggCCgcGCCgGCg- -3'
miRNA:   3'- gGGGGGGG-------GGGGGG--GGaaCGGgUGac -5'
21375 5' -68.3 NC_004812.1 + 153289 0.66 0.40687
Target:  5'- gCCCCUCgggCCCCUCCCCUgGCUC-CUc -3'
miRNA:   3'- gGGGGGG---GGGGGGGGGAaCGGGuGAc -5'
21375 5' -68.3 NC_004812.1 + 395 0.66 0.40687
Target:  5'- uCUCUCCCCCCCgUCCCUcucCCCAg-- -3'
miRNA:   3'- -GGGGGGGGGGGgGGGGAac-GGGUgac -5'
21375 5' -68.3 NC_004812.1 + 125903 0.66 0.40687
Target:  5'- uCUCUCCCCCCCgUCCCUcucCCCAg-- -3'
miRNA:   3'- -GGGGGGGGGGGgGGGGAac-GGGUgac -5'
21375 5' -68.3 NC_004812.1 + 6160 0.66 0.40687
Target:  5'- uUCCgCCCUCUCUCCCC--GCCC-CUGu -3'
miRNA:   3'- -GGGgGGGGGGGGGGGGaaCGGGuGAC- -5'
21375 5' -68.3 NC_004812.1 + 131669 0.66 0.40687
Target:  5'- uUCCgCCCUCUCUCCCC--GCCC-CUGu -3'
miRNA:   3'- -GGGgGGGGGGGGGGGGaaCGGGuGAC- -5'
21375 5' -68.3 NC_004812.1 + 105010 0.66 0.40687
Target:  5'- gCgCCCCUCgCgCCCCgcggUGCCgACUGa -3'
miRNA:   3'- gGgGGGGGGgGgGGGGa---ACGGgUGAC- -5'
21375 5' -68.3 NC_004812.1 + 79679 0.66 0.40687
Target:  5'- gCCCCCgCCCaCCUCgCCUCggggUGCUC-CUGg -3'
miRNA:   3'- -GGGGG-GGG-GGGG-GGGGa---ACGGGuGAC- -5'
21375 5' -68.3 NC_004812.1 + 122388 0.66 0.40687
Target:  5'- gCCCCUCgggCCCCUCCCCUgGCUC-CUc -3'
miRNA:   3'- gGGGGGG---GGGGGGGGGAaCGGGuGAc -5'
21375 5' -68.3 NC_004812.1 + 75983 0.66 0.40608
Target:  5'- uCCCCgCCCCucuccaccgcggaCCCCCCaCCgaGCCCcCa- -3'
miRNA:   3'- -GGGG-GGGG-------------GGGGGG-GGaaCGGGuGac -5'
21375 5' -68.3 NC_004812.1 + 58856 0.66 0.40608
Target:  5'- uUCCCCCaCCacaCCCCCaCCUucuuuccccagcuUGCCgcCGCUGu -3'
miRNA:   3'- -GGGGGG-GGg--GGGGG-GGA-------------ACGG--GUGAC- -5'
21375 5' -68.3 NC_004812.1 + 126840 0.66 0.399005
Target:  5'- gCgCCCCgCCCCUCCCCgguuuggcGUCCGCc- -3'
miRNA:   3'- -GgGGGGgGGGGGGGGGaa------CGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 85121 0.66 0.399005
Target:  5'- gCCCCUgcugCCCCUgcugCCCCUgcGCCCGCa- -3'
miRNA:   3'- gGGGGG----GGGGG----GGGGGaaCGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 1332 0.66 0.399005
Target:  5'- gCgCCCCgCCCCUCCCCgguuuggcGUCCGCc- -3'
miRNA:   3'- -GgGGGGgGGGGGGGGGaa------CGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 1586 0.66 0.399005
Target:  5'- uCCCCCCCgcacggcuCCCCgCCUCCgggcGcCCCGCg- -3'
miRNA:   3'- -GGGGGGG--------GGGG-GGGGGaa--C-GGGUGac -5'
21375 5' -68.3 NC_004812.1 + 116406 0.66 0.399005
Target:  5'- aCCCCCgCgCagagCCCCCgcgGCCCGCg- -3'
miRNA:   3'- gGGGGGgGgGg---GGGGGaa-CGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 127094 0.66 0.399005
Target:  5'- uCCCCCCCgcacggcuCCCCgCCUCCgggcGcCCCGCg- -3'
miRNA:   3'- -GGGGGGG--------GGGG-GGGGGaa--C-GGGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.