miRNA display CGI


Results 1 - 20 of 563 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 3' -56.9 NC_004812.1 + 112300 0.66 0.896513
Target:  5'- cCGGGccGAGcucgagucgcgccucGGGCGGCUGGCcgCGGagGCg -3'
miRNA:   3'- -GCCCuaUUU---------------UCCGUCGGCCGa-GCC--CG- -5'
21377 3' -56.9 NC_004812.1 + 94636 0.66 0.893906
Target:  5'- uGGGAccggcgacGAGGGCgcgGGCgCGaGCUCGGGa -3'
miRNA:   3'- gCCCUau------UUUCCG---UCG-GC-CGAGCCCg -5'
21377 3' -56.9 NC_004812.1 + 29783 0.66 0.893906
Target:  5'- gGGcGAUGGucGGGCAGCUGGU---GGCa -3'
miRNA:   3'- gCC-CUAUUu-UCCGUCGGCCGagcCCG- -5'
21377 3' -56.9 NC_004812.1 + 73765 0.66 0.893906
Target:  5'- gCGGGGgcGccGGguGCCcgcgGGCUCcgcgagcgGGGCg -3'
miRNA:   3'- -GCCCUauUuuCCguCGG----CCGAG--------CCCG- -5'
21377 3' -56.9 NC_004812.1 + 107877 0.66 0.893906
Target:  5'- cCGGGG----GGGCGGUCGucCUCcGGGCc -3'
miRNA:   3'- -GCCCUauuuUCCGUCGGCc-GAG-CCCG- -5'
21377 3' -56.9 NC_004812.1 + 38820 0.66 0.893906
Target:  5'- uCGGGGgcugcGGCGcgcGCCGGCgcggcCGGGg -3'
miRNA:   3'- -GCCCUauuuuCCGU---CGGCCGa----GCCCg -5'
21377 3' -56.9 NC_004812.1 + 17398 0.66 0.893906
Target:  5'- gGGGGUGGuggugggggcGGGGguGgUGGUggGGGCg -3'
miRNA:   3'- gCCCUAUU----------UUCCguCgGCCGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 7919 0.66 0.893906
Target:  5'- uCGGGGgcugcGGCGcgcGCCGGCgcggcCGGGg -3'
miRNA:   3'- -GCCCUauuuuCCGU---CGGCCGa----GCCCg -5'
21377 3' -56.9 NC_004812.1 + 71625 0.66 0.893906
Target:  5'- aGGGGcagcAGGGGCAGCaggGGCagcagGGGCa -3'
miRNA:   3'- gCCCUau--UUUCCGUCGg--CCGag---CCCG- -5'
21377 3' -56.9 NC_004812.1 + 26302 0.66 0.893906
Target:  5'- gGGGAaGGucGGgGGUCGGCg-GGGUu -3'
miRNA:   3'- gCCCUaUUuuCCgUCGGCCGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 141792 0.66 0.893906
Target:  5'- gCGGGG----GGGCgGGCCGcGCggGGGUg -3'
miRNA:   3'- -GCCCUauuuUCCG-UCGGC-CGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 17362 0.66 0.893906
Target:  5'- gGGGGUGGuggugggggcGGGGguGgUGGUggGGGCg -3'
miRNA:   3'- gCCCUAUU----------UUCCguCgGCCGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 20384 0.66 0.893906
Target:  5'- uGGGccAUGAgcAGGGCguagAGCUGGCggUGGGUg -3'
miRNA:   3'- gCCC--UAUU--UUCCG----UCGGCCGa-GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 71589 0.66 0.893906
Target:  5'- aGGGGcagcAGGGGCAGCaggGGCagcagGGGCa -3'
miRNA:   3'- gCCCUau--UUUCCGUCGg--CCGag---CCCG- -5'
21377 3' -56.9 NC_004812.1 + 71553 0.66 0.893906
Target:  5'- aGGGGcagcAGGGGCAGCaggGGCagcagGGGCa -3'
miRNA:   3'- gCCCUau--UUUCCGUCGg--CCGag---CCCG- -5'
21377 3' -56.9 NC_004812.1 + 46653 0.66 0.893906
Target:  5'- uGGGGUG--GGGUccguGGCCGGg--GGGCa -3'
miRNA:   3'- gCCCUAUuuUCCG----UCGGCCgagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 71517 0.66 0.893906
Target:  5'- aGGGGcagcAGGGGCAGCaggGGCagcagGGGCa -3'
miRNA:   3'- gCCCUau--UUUCCGUCGg--CCGag---CCCG- -5'
21377 3' -56.9 NC_004812.1 + 18340 0.66 0.893906
Target:  5'- aCGGGAUGucugucgacAucGGCcaCCGGCggcgcCGGGCc -3'
miRNA:   3'- -GCCCUAU---------UuuCCGucGGCCGa----GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 17326 0.66 0.893906
Target:  5'- gGGGGUGGuggugggggcGGGGguGgUGGUggGGGCg -3'
miRNA:   3'- gCCCUAUU----------UUCCguCgGCCGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 145280 0.66 0.893906
Target:  5'- cCGGGcAUcGGGGGGguGUgCGGUguggCGGGCc -3'
miRNA:   3'- -GCCC-UA-UUUUCCguCG-GCCGa---GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.