miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21379 5' -55.6 NC_004812.1 + 75972 0.66 0.947808
Target:  5'- cGGCCAgcgccugcaGGCGGCGca-GCuCGACgGCGu -3'
miRNA:   3'- -CCGGUa--------CCGCUGCuugCG-GCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 52599 0.66 0.947808
Target:  5'- aGGCCcgcgaacagGGCGGCGugcGCGUCGGCcuugAUGa -3'
miRNA:   3'- -CCGGua-------CCGCUGCu--UGCGGCUGa---UGC- -5'
21379 5' -55.6 NC_004812.1 + 22175 0.66 0.947808
Target:  5'- cGCCGUGcggauCGGCgGAGCGCCGGaggagGCGa -3'
miRNA:   3'- cCGGUACc----GCUG-CUUGCGGCUga---UGC- -5'
21379 5' -55.6 NC_004812.1 + 122219 0.66 0.947808
Target:  5'- cGCCccGGgGGCGGGCGCggggGGCUcgGCGg -3'
miRNA:   3'- cCGGuaCCgCUGCUUGCGg---CUGA--UGC- -5'
21379 5' -55.6 NC_004812.1 + 113051 0.66 0.947808
Target:  5'- cGGCC---GCGGCcGGCGUCGGCcGCGg -3'
miRNA:   3'- -CCGGuacCGCUGcUUGCGGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 128003 0.66 0.947808
Target:  5'- cGGCCucgcgGGCgGGCGAGuCGgCGGC-GCGg -3'
miRNA:   3'- -CCGGua---CCG-CUGCUU-GCgGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 153120 0.66 0.947808
Target:  5'- cGCCccGGgGGCGGGCGCggggGGCUcgGCGg -3'
miRNA:   3'- cCGGuaCCgCUGCUUGCGg---CUGA--UGC- -5'
21379 5' -55.6 NC_004812.1 + 144713 0.66 0.947808
Target:  5'- gGGCCugcUGGUGAUG---GUCGACUGCc -3'
miRNA:   3'- -CCGGu--ACCGCUGCuugCGGCUGAUGc -5'
21379 5' -55.6 NC_004812.1 + 152640 0.66 0.947808
Target:  5'- gGGCCGgcgcGCGGCGGggggGCGCCGGgcCUcCGg -3'
miRNA:   3'- -CCGGUac--CGCUGCU----UGCGGCU--GAuGC- -5'
21379 5' -55.6 NC_004812.1 + 12554 0.66 0.947808
Target:  5'- aGGCCcccGGCGGCGugcCGCCG-CcGCa -3'
miRNA:   3'- -CCGGua-CCGCUGCuu-GCGGCuGaUGc -5'
21379 5' -55.6 NC_004812.1 + 3352 0.66 0.947808
Target:  5'- cGGUCAgcucGGCGACGAcGCGCgGGgcGCa -3'
miRNA:   3'- -CCGGUa---CCGCUGCU-UGCGgCUgaUGc -5'
21379 5' -55.6 NC_004812.1 + 47203 0.66 0.947808
Target:  5'- uGGaCC-UGGgGGCGcGGCGCCccGACUGCc -3'
miRNA:   3'- -CC-GGuACCgCUGC-UUGCGG--CUGAUGc -5'
21379 5' -55.6 NC_004812.1 + 105339 0.66 0.947808
Target:  5'- cGCCAUGcucgcGCGACGAGgGCCcgguGGCccGCGg -3'
miRNA:   3'- cCGGUAC-----CGCUGCUUgCGG----CUGa-UGC- -5'
21379 5' -55.6 NC_004812.1 + 68760 0.66 0.947808
Target:  5'- cGCCGUcGuGCG-CGcACGCCGAgCUGCu -3'
miRNA:   3'- cCGGUA-C-CGCuGCuUGCGGCU-GAUGc -5'
21379 5' -55.6 NC_004812.1 + 60097 0.66 0.947808
Target:  5'- cGCCAgguaGGCGcCGAugGCCGug-GCc -3'
miRNA:   3'- cCGGUa---CCGCuGCUugCGGCugaUGc -5'
21379 5' -55.6 NC_004812.1 + 46916 0.66 0.947808
Target:  5'- cGGCCGccgccGCGGCGGAcacauccgcCGCCGACaGCc -3'
miRNA:   3'- -CCGGUac---CGCUGCUU---------GCGGCUGaUGc -5'
21379 5' -55.6 NC_004812.1 + 143678 0.66 0.947808
Target:  5'- aGGCCccGGCGAucgucgcgcuCGAGCgcucGCCGGCcGCc -3'
miRNA:   3'- -CCGGuaCCGCU----------GCUUG----CGGCUGaUGc -5'
21379 5' -55.6 NC_004812.1 + 82750 0.66 0.947808
Target:  5'- cGCCcUGaccGCGACG-ACGCUGACgcGCGa -3'
miRNA:   3'- cCGGuAC---CGCUGCuUGCGGCUGa-UGC- -5'
21379 5' -55.6 NC_004812.1 + 2495 0.66 0.947808
Target:  5'- cGGCCucgcgGGCgGGCGAGuCGgCGGC-GCGg -3'
miRNA:   3'- -CCGGua---CCG-CUGCUU-GCgGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 38376 0.66 0.947808
Target:  5'- aGGCg--GGCGGCGGGgccCGCCGGgaGCu -3'
miRNA:   3'- -CCGguaCCGCUGCUU---GCGGCUgaUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.