miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 3' -57.2 NC_004812.1 + 94697 0.66 0.903894
Target:  5'- gGGUGG-GGCGaGGucuugguugccuagcAACGACG-GAUCa -3'
miRNA:   3'- aCCACCaCCGCgCC---------------UUGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 23622 0.66 0.901426
Target:  5'- -aGUGGccgGGCGCccagacGGGCGuccGCGUGACCc -3'
miRNA:   3'- acCACCa--CCGCGc-----CUUGC---UGCACUGG- -5'
21380 3' -57.2 NC_004812.1 + 75238 0.66 0.901426
Target:  5'- cGGUGGccucGGCGCGcugcugcuUGGCGcgGACCa -3'
miRNA:   3'- aCCACCa---CCGCGCcuu-----GCUGCa-CUGG- -5'
21380 3' -57.2 NC_004812.1 + 127706 0.66 0.901426
Target:  5'- ---cGGaGGCGCGccACGGCGcgGACCa -3'
miRNA:   3'- accaCCaCCGCGCcuUGCUGCa-CUGG- -5'
21380 3' -57.2 NC_004812.1 + 101430 0.66 0.901426
Target:  5'- cGGUcGGUGaGCucGCGGAGCG-CGUccCCg -3'
miRNA:   3'- aCCA-CCAC-CG--CGCCUUGCuGCAcuGG- -5'
21380 3' -57.2 NC_004812.1 + 132312 0.66 0.901426
Target:  5'- cGGUGG-GGUuggGCGGGACGGaaacucaacaGcGGCCg -3'
miRNA:   3'- aCCACCaCCG---CGCCUUGCUg---------CaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 140882 0.66 0.8951
Target:  5'- cGGgGGUGGgugGCGGGACGcGCGggGGCa -3'
miRNA:   3'- aCCaCCACCg--CGCCUUGC-UGCa-CUGg -5'
21380 3' -57.2 NC_004812.1 + 136542 0.66 0.8951
Target:  5'- cGcUGGcUGGCGCGc-GCGACGcggGGCCu -3'
miRNA:   3'- aCcACC-ACCGCGCcuUGCUGCa--CUGG- -5'
21380 3' -57.2 NC_004812.1 + 112247 0.66 0.8951
Target:  5'- gGGcGGacggGGCGUGGuugGugGGCGgGGCCa -3'
miRNA:   3'- aCCaCCa---CCGCGCC---UugCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 129029 0.66 0.888555
Target:  5'- cGGcGGccccgGGgGCGGGgccGCGGCGccgGGCCg -3'
miRNA:   3'- aCCaCCa----CCgCGCCU---UGCUGCa--CUGG- -5'
21380 3' -57.2 NC_004812.1 + 106207 0.66 0.888555
Target:  5'- cGGgcgccaGGUGGCGgaagGGGGCGACGgcGGCg -3'
miRNA:   3'- aCCa-----CCACCGCg---CCUUGCUGCa-CUGg -5'
21380 3' -57.2 NC_004812.1 + 22267 0.66 0.888555
Target:  5'- cGGgcccGG-GGCGCgcgucuuucGGAGCGAgGgUGACCc -3'
miRNA:   3'- aCCa---CCaCCGCG---------CCUUGCUgC-ACUGG- -5'
21380 3' -57.2 NC_004812.1 + 48139 0.66 0.888555
Target:  5'- gGGUGGccguccucgaGGCGCGGcgccgGGCGGCG--GCCg -3'
miRNA:   3'- aCCACCa---------CCGCGCC-----UUGCUGCacUGG- -5'
21380 3' -57.2 NC_004812.1 + 124728 0.66 0.888555
Target:  5'- gGGUGGgaGGCGCuGGcCGGgGgGACCg -3'
miRNA:   3'- aCCACCa-CCGCGcCUuGCUgCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 94329 0.66 0.888555
Target:  5'- cGGcGGUGaccGCGUGGGucuccgcgcGCGGCGcGGCCc -3'
miRNA:   3'- aCCaCCAC---CGCGCCU---------UGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 113744 0.66 0.888555
Target:  5'- aGGUGcGcGGCGaGGAgcGCGGCcagguaGUGGCCa -3'
miRNA:   3'- aCCAC-CaCCGCgCCU--UGCUG------CACUGG- -5'
21380 3' -57.2 NC_004812.1 + 3521 0.66 0.888555
Target:  5'- cGGcGGccccgGGgGCGGGgccGCGGCGccgGGCCg -3'
miRNA:   3'- aCCaCCa----CCgCGCCU---UGCUGCa--CUGG- -5'
21380 3' -57.2 NC_004812.1 + 147983 0.66 0.888555
Target:  5'- -cGUGcucaUGGCGCcGGGCGGCGgGGCCg -3'
miRNA:   3'- acCACc---ACCGCGcCUUGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 94334 0.66 0.887888
Target:  5'- aGGUGuGcGGCGCGGccugcgcggggcgGGCGGCGUuggagcGCCg -3'
miRNA:   3'- aCCAC-CaCCGCGCC-------------UUGCUGCAc-----UGG- -5'
21380 3' -57.2 NC_004812.1 + 138319 0.66 0.881793
Target:  5'- gGGUGGcgccGGCGCGGAGgaGGCccugcgGAUCg -3'
miRNA:   3'- aCCACCa---CCGCGCCUUg-CUGca----CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.