miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 18197 0.66 0.884363
Target:  5'- gGCAGCCccccgcguccaCGCGGUaguaGGCCACCcGGg -3'
miRNA:   3'- -UGUCGGucua-------GCGCCA----CUGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 133148 0.66 0.881608
Target:  5'- cCAGCaggaGGAcgacgagCGCGGcaaacgcGGCCGCCAGGc -3'
miRNA:   3'- uGUCGg---UCUa------GCGCCa------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 83353 0.66 0.881608
Target:  5'- cACuGUCGGGUcCGCGccGGCC-CCAGGg -3'
miRNA:   3'- -UGuCGGUCUA-GCGCcaCUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 153186 0.66 0.881608
Target:  5'- -gGGCgCGGcggCGcCGGagGGCCGCCGGGg -3'
miRNA:   3'- ugUCG-GUCua-GC-GCCa-CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 13128 0.66 0.881608
Target:  5'- uGCGGCuCGGGcgGUGGUG-CCGCCGGc -3'
miRNA:   3'- -UGUCG-GUCUagCGCCACuGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 64018 0.66 0.881608
Target:  5'- uCGGUCAGcUCGgGGccccgGAgCGCCAGGc -3'
miRNA:   3'- uGUCGGUCuAGCgCCa----CUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 122285 0.66 0.881608
Target:  5'- -gGGCgCGGcggCGcCGGagGGCCGCCGGGg -3'
miRNA:   3'- ugUCG-GUCua-GC-GCCa-CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 47497 0.66 0.881608
Target:  5'- -gGGUCucGGGUCGUcacggcgcggaGGUGGCCgGCCAGGc -3'
miRNA:   3'- ugUCGG--UCUAGCG-----------CCACUGG-UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 130920 0.66 0.881608
Target:  5'- uGCGGCUAGAcugUCagucggcgGCGGUGAUguUCGGGc -3'
miRNA:   3'- -UGUCGGUCU---AG--------CGCCACUGguGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 49430 0.66 0.880913
Target:  5'- nGCcGCCGcGUCGUggacaugucguccGGUGcCCGCCAGGc -3'
miRNA:   3'- -UGuCGGUcUAGCG-------------CCACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 15549 0.66 0.880913
Target:  5'- cGCAGCgCGGAgagUGCGucguccuGUGGCCGCCGcuguGGa -3'
miRNA:   3'- -UGUCG-GUCUa--GCGC-------CACUGGUGGU----CC- -5'
21380 5' -57.3 NC_004812.1 + 61304 0.66 0.880913
Target:  5'- gGCGGCCuccgcGGUcguucaaCGCGGUGgagaGCCACCGcGGc -3'
miRNA:   3'- -UGUCGGu----CUA-------GCGCCAC----UGGUGGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 47606 0.66 0.880217
Target:  5'- gGCAGCCGcGGUCGUGGgcgauaaacuCCuuCAGGg -3'
miRNA:   3'- -UGUCGGU-CUAGCGCCacu-------GGugGUCC- -5'
21380 5' -57.3 NC_004812.1 + 103767 0.66 0.874569
Target:  5'- -gGGCCGcGGUCggGCGuGUGGCCGucccCCAGGc -3'
miRNA:   3'- ugUCGGU-CUAG--CGC-CACUGGU----GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 73050 0.66 0.874569
Target:  5'- -aGGCCGGGUCGCuGcgcagGGCCACgacgaCGGGg -3'
miRNA:   3'- ugUCGGUCUAGCGcCa----CUGGUG-----GUCC- -5'
21380 5' -57.3 NC_004812.1 + 72188 0.66 0.874569
Target:  5'- uGCGGCCGGGggccccgggucgUCGCGG-GGCguCCGcGGc -3'
miRNA:   3'- -UGUCGGUCU------------AGCGCCaCUGguGGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 30513 0.66 0.874569
Target:  5'- aACAGaaAGAUCGCGaaGAaggCGCCGGGg -3'
miRNA:   3'- -UGUCggUCUAGCGCcaCUg--GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 126754 0.66 0.874569
Target:  5'- cGCGGagaGGAUC-CGGccucaGGCCACCGGGu -3'
miRNA:   3'- -UGUCgg-UCUAGcGCCa----CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 60485 0.66 0.874569
Target:  5'- cCGGCCAGggCGCGGUuGAagaaCGgaCGGGg -3'
miRNA:   3'- uGUCGGUCuaGCGCCA-CUg---GUg-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 61041 0.66 0.874569
Target:  5'- cGCGGCCG---UGCGGUuagcccgcucGACCccGCCGGGg -3'
miRNA:   3'- -UGUCGGUcuaGCGCCA----------CUGG--UGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.