miRNA display CGI


Results 1 - 20 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 129676 0.66 0.81959
Target:  5'- --gCGCGGCGAUgACGcccGC-GGCGCc -3'
miRNA:   3'- aaaGCGCCGUUGgUGCa--CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 129716 0.66 0.81959
Target:  5'- ---gGCGGgGACCGCG-GC-GGCGUc -3'
miRNA:   3'- aaagCGCCgUUGGUGCaCGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 94659 0.66 0.81959
Target:  5'- -cUgGCGGCGGCCGuugguuuuuauCGacGCGGGUGCGu -3'
miRNA:   3'- aaAgCGCCGUUGGU-----------GCa-CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 4924 0.66 0.81959
Target:  5'- -cUCGCuGCGGcCCGCGgagGC-GGCGCu -3'
miRNA:   3'- aaAGCGcCGUU-GGUGCa--CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 70876 0.66 0.81959
Target:  5'- --cCGCGaaGGCCGCGU--AGGCGCAc -3'
miRNA:   3'- aaaGCGCcgUUGGUGCAcgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 107831 0.66 0.81959
Target:  5'- gUUCGCGaGguAgCGgG-GCAGGCGCu -3'
miRNA:   3'- aAAGCGC-CguUgGUgCaCGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 82354 0.66 0.81959
Target:  5'- --gCGCGGCcggggcgaGGCgUACcUGCGGGCGCGc -3'
miRNA:   3'- aaaGCGCCG--------UUG-GUGcACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 60088 0.66 0.81959
Target:  5'- ---gGCGGC--CCGCGccagGUAGGCGCc -3'
miRNA:   3'- aaagCGCCGuuGGUGCa---CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 130432 0.66 0.81959
Target:  5'- -cUCGCuGCGGcCCGCGgagGC-GGCGCu -3'
miRNA:   3'- aaAGCGcCGUU-GGUGCa--CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 4207 0.66 0.81959
Target:  5'- ---gGCGGgGACCGCG-GC-GGCGUc -3'
miRNA:   3'- aaagCGCCgUUGGUGCaCGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 90641 0.66 0.81959
Target:  5'- cUUCGUGGC--CCACGUGU-GGCagaGCAc -3'
miRNA:   3'- aAAGCGCCGuuGGUGCACGuCCG---CGU- -5'
21382 3' -58 NC_004812.1 + 138703 0.66 0.81959
Target:  5'- -cUCGCgcccGGaCGACCGCGgcgcgGCGGGCccGCGg -3'
miRNA:   3'- aaAGCG----CC-GUUGGUGCa----CGUCCG--CGU- -5'
21382 3' -58 NC_004812.1 + 99269 0.66 0.81959
Target:  5'- --aCGCaccGGCGGCC-CGUGgggucCAGGCGCc -3'
miRNA:   3'- aaaGCG---CCGUUGGuGCAC-----GUCCGCGu -5'
21382 3' -58 NC_004812.1 + 81255 0.66 0.81959
Target:  5'- -gUCGgGGCGcucgAgCGCGUGgacCAGGCGCc -3'
miRNA:   3'- aaAGCgCCGU----UgGUGCAC---GUCCGCGu -5'
21382 3' -58 NC_004812.1 + 4167 0.66 0.81959
Target:  5'- --gCGCGGCGAUgACGcccGC-GGCGCc -3'
miRNA:   3'- aaaGCGCCGUUGgUGCa--CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 19699 0.66 0.81959
Target:  5'- --gCGCGGCGGCgCGCG-GCGccGGCGa- -3'
miRNA:   3'- aaaGCGCCGUUG-GUGCaCGU--CCGCgu -5'
21382 3' -58 NC_004812.1 + 139755 0.66 0.818727
Target:  5'- -gUCGCGGUcccccgcGACCGCGcGCcuaaGGGCgGCGg -3'
miRNA:   3'- aaAGCGCCG-------UUGGUGCaCG----UCCG-CGU- -5'
21382 3' -58 NC_004812.1 + 47113 0.66 0.816129
Target:  5'- -gUCGCGGCGagacgcagcagccGCCGCacgaugccgcagcccGCGGGCGCc -3'
miRNA:   3'- aaAGCGCCGU-------------UGGUGca-------------CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 105396 0.66 0.810889
Target:  5'- -cUCGCuGGC-GCCG-GUGCcGGCGCu -3'
miRNA:   3'- aaAGCG-CCGuUGGUgCACGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 32495 0.66 0.810889
Target:  5'- -gUCgGCGGCGuACCGCGuUGUcGGCgGCAc -3'
miRNA:   3'- aaAG-CGCCGU-UGGUGC-ACGuCCG-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.