miRNA display CGI


Results 1 - 20 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 98937 0.66 0.762515
Target:  5'- cGGCGCCCggaagAgACCCggGGCCgcggacgaccuguuuGGCGACg -3'
miRNA:   3'- -UCGUGGGga---UgUGGGa-CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 4743 0.66 0.759679
Target:  5'- cGCGCCCCgggggcggcggcucgGCGCCg-GGCCA-CGGCu -3'
miRNA:   3'- uCGUGGGGa--------------UGUGGgaCCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 130251 0.66 0.759679
Target:  5'- cGCGCCCCgggggcggcggcucgGCGCCg-GGCCA-CGGCu -3'
miRNA:   3'- uCGUGGGGa--------------UGUGGgaCCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 3729 0.66 0.758732
Target:  5'- gAGCGCaCCUgGCGCgggCCgcgcGCCAGCAGCg -3'
miRNA:   3'- -UCGUG-GGGaUGUG---GGac--CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 4360 0.66 0.758732
Target:  5'- gGGCGCgCgUgcaacauggcgcGCGCCCUGGCCgaGGCGu- -3'
miRNA:   3'- -UCGUGgGgA------------UGUGGGACCGG--UCGUug -5'
21382 5' -59.3 NC_004812.1 + 56149 0.66 0.758732
Target:  5'- cGCGCCCCUcuACGCCCgcaccacGCCcucGCAGu -3'
miRNA:   3'- uCGUGGGGA--UGUGGGac-----CGGu--CGUUg -5'
21382 5' -59.3 NC_004812.1 + 105717 0.66 0.758732
Target:  5'- cGGgGCCCCgaACACCggGGCCGGgGGg -3'
miRNA:   3'- -UCgUGGGGa-UGUGGgaCCGGUCgUUg -5'
21382 5' -59.3 NC_004812.1 + 86019 0.66 0.758732
Target:  5'- cGgGCCCCcGC-CCCUcucGGCCAacGCGGCc -3'
miRNA:   3'- uCgUGGGGaUGuGGGA---CCGGU--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 117610 0.66 0.758732
Target:  5'- cAGCGCCuCCUGCAguccuUCCUGaaGCUGGcCGACa -3'
miRNA:   3'- -UCGUGG-GGAUGU-----GGGAC--CGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 73241 0.66 0.758732
Target:  5'- cGgACCgCCgcCGCCCUggGGCCGGCGc- -3'
miRNA:   3'- uCgUGG-GGauGUGGGA--CCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 35261 0.66 0.758732
Target:  5'- gGGCGCgCgUgcaacauggcgcGCGCCCUGGCCgaGGCGu- -3'
miRNA:   3'- -UCGUGgGgA------------UGUGGGACCGG--UCGUug -5'
21382 5' -59.3 NC_004812.1 + 54274 0.66 0.758732
Target:  5'- cGCACCCCgguUAUUCcGGUCGcGCGACa -3'
miRNA:   3'- uCGUGGGGau-GUGGGaCCGGU-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 38312 0.66 0.758732
Target:  5'- cGcCACCCagcggaUGCGCCCgugGGCgAGcCGGCg -3'
miRNA:   3'- uC-GUGGGg-----AUGUGGGa--CCGgUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 52213 0.66 0.758732
Target:  5'- uGCGCUCCauggccgACACCagGGCCAuGUAGCg -3'
miRNA:   3'- uCGUGGGGa------UGUGGgaCCGGU-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 103064 0.66 0.758732
Target:  5'- gAGCACCUCgGCGCCCUcGGauCCGG-AGCc -3'
miRNA:   3'- -UCGUGGGGaUGUGGGA-CC--GGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 129237 0.66 0.758732
Target:  5'- gAGCGCaCCUgGCGCgggCCgcgcGCCAGCAGCg -3'
miRNA:   3'- -UCGUG-GGGaUGUG---GGac--CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 33825 0.66 0.758732
Target:  5'- gAGCccGCCCCguccucgguCACCCUcGGCgGGCGc- -3'
miRNA:   3'- -UCG--UGGGGau-------GUGGGA-CCGgUCGUug -5'
21382 5' -59.3 NC_004812.1 + 2924 0.66 0.758732
Target:  5'- gAGCccGCCCCguccucgguCACCCUcGGCgGGCGc- -3'
miRNA:   3'- -UCG--UGGGGau-------GUGGGA-CCGgUCGUug -5'
21382 5' -59.3 NC_004812.1 + 125404 0.66 0.757783
Target:  5'- uGGUugCCC-GCGCUCUcgggcgcGGCCGGaCGGCg -3'
miRNA:   3'- -UCGugGGGaUGUGGGA-------CCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 156305 0.66 0.757783
Target:  5'- uGGUugCCC-GCGCUCUcgggcgcGGCCGGaCGGCg -3'
miRNA:   3'- -UCGugGGGaUGUGGGA-------CCGGUC-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.