miRNA display CGI


Results 1 - 20 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 8250 0.66 0.872672
Target:  5'- -cGGgGGUCCGCccccGggGGCGCCGGgGg -3'
miRNA:   3'- gaCUgCCAGGCG----UagCUGUGGCCgCg -5'
21383 3' -58.1 NC_004812.1 + 40087 0.66 0.872672
Target:  5'- -cGGCGGgCgGCGggCGGC-CgGGCGCg -3'
miRNA:   3'- gaCUGCCaGgCGUa-GCUGuGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 125278 0.66 0.872672
Target:  5'- -cGGCGGgCgCGCG-CGagaGCGCCGcGCGCg -3'
miRNA:   3'- gaCUGCCaG-GCGUaGC---UGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 32286 0.66 0.872672
Target:  5'- -cGACGGcCCGCccCG-CGCC-GCGCc -3'
miRNA:   3'- gaCUGCCaGGCGuaGCuGUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 156179 0.66 0.872672
Target:  5'- -cGGCGGgCgCGCG-CGagaGCGCCGcGCGCg -3'
miRNA:   3'- gaCUGCCaG-GCGUaGC---UGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 103713 0.66 0.872672
Target:  5'- -cGACGcccucgagccCUGCAccgUCGGuCACCGGCGCu -3'
miRNA:   3'- gaCUGCca--------GGCGU---AGCU-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 1385 0.66 0.872672
Target:  5'- -cGACGGcCCGCccCG-CGCC-GCGCc -3'
miRNA:   3'- gaCUGCCaGGCGuaGCuGUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 70944 0.66 0.872672
Target:  5'- -aGGCGGgCgGCGU--ACugCGGCGCc -3'
miRNA:   3'- gaCUGCCaGgCGUAgcUGugGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 125238 0.66 0.872672
Target:  5'- -aGGCGcGUgCGCA-CGcaggcGCGCCGGCGg -3'
miRNA:   3'- gaCUGC-CAgGCGUaGC-----UGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 39151 0.66 0.872672
Target:  5'- -cGGgGGUCCGCccccGggGGCGCCGGgGg -3'
miRNA:   3'- gaCUgCCAGGCG----UagCUGUGGCCgCg -5'
21383 3' -58.1 NC_004812.1 + 71952 0.66 0.872672
Target:  5'- -gGGCGGcCCuGCcgCGACGCgCGcCGCg -3'
miRNA:   3'- gaCUGCCaGG-CGuaGCUGUG-GCcGCG- -5'
21383 3' -58.1 NC_004812.1 + 156139 0.66 0.872672
Target:  5'- -aGGCGcGUgCGCA-CGcaggcGCGCCGGCGg -3'
miRNA:   3'- gaCUGC-CAgGCGUaGC-----UGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 81414 0.66 0.872672
Target:  5'- -cGACuGaCCGCGUCGGCcauggcguCCGGgGCc -3'
miRNA:   3'- gaCUGcCaGGCGUAGCUGu-------GGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 75469 0.66 0.872672
Target:  5'- -gGACGGUCUGCuccgCGGC-CgCGGC-Ca -3'
miRNA:   3'- gaCUGCCAGGCGua--GCUGuG-GCCGcG- -5'
21383 3' -58.1 NC_004812.1 + 84329 0.66 0.871962
Target:  5'- ---cCGGcCCGCAccUCGGCcauccgaGCCGGCGg -3'
miRNA:   3'- gacuGCCaGGCGU--AGCUG-------UGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 75683 0.66 0.871962
Target:  5'- -gGACGGccccccgcccgacUCCGCggagggcagGUCGGuucucacgaGCCGGCGCg -3'
miRNA:   3'- gaCUGCC-------------AGGCG---------UAGCUg--------UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 104876 0.66 0.865479
Target:  5'- -cGGCGGUCgucguCGcCGUCGccguCGCCguGGCGCa -3'
miRNA:   3'- gaCUGCCAG-----GC-GUAGCu---GUGG--CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 152816 0.66 0.865479
Target:  5'- -cGA-GG-CCGcCGUCGcCGCCGuGCGCg -3'
miRNA:   3'- gaCUgCCaGGC-GUAGCuGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 155089 0.66 0.865479
Target:  5'- -cGGCGG-CgGCAugcccUCGcGCGgCGGCGCg -3'
miRNA:   3'- gaCUGCCaGgCGU-----AGC-UGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 139093 0.66 0.865479
Target:  5'- uUGcACGGggagCCGaaagacgCGGCugggGCCGGCGCg -3'
miRNA:   3'- gAC-UGCCa---GGCgua----GCUG----UGGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.