miRNA display CGI


Results 1 - 20 of 534 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 3' -64.7 NC_004812.1 + 92448 0.65 0.578661
Target:  5'- cCCUcCCGCgcggaGCCCGccGCGCCgCCguccccgaucgcgUCCGCGu -3'
miRNA:   3'- -GGA-GGCG-----CGGGU--CGCGGaGG-------------AGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 109296 0.65 0.578661
Target:  5'- aCCUgCGCGCCCGcacguacGCGCCggcggcgCUggaggcggcgCCGCGc -3'
miRNA:   3'- -GGAgGCGCGGGU-------CGCGGa------GGa---------GGCGC- -5'
21385 3' -64.7 NC_004812.1 + 55626 0.65 0.578661
Target:  5'- -gUCCGCGUacagccgCCGGCGCUcgcggaCgUCCGCGg -3'
miRNA:   3'- ggAGGCGCG-------GGUCGCGGa-----GgAGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 151265 0.66 0.573931
Target:  5'- gCCgCCGCGCCCccgccgaccccgggcGGCGCC-CCggcggacgaCGCGc -3'
miRNA:   3'- -GGaGGCGCGGG---------------UCGCGGaGGag-------GCGC- -5'
21385 3' -64.7 NC_004812.1 + 96947 0.66 0.573931
Target:  5'- aCgCgGCGCCC-GCGCCggcccguccgucucaUCCcCCGCGg -3'
miRNA:   3'- gGaGgCGCGGGuCGCGG---------------AGGaGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 25757 0.66 0.573931
Target:  5'- gCCgCCGCGCCCccgccgaccccgggcGGCGCC-CCggcggacgaCGCGc -3'
miRNA:   3'- -GGaGGCGCGGG---------------UCGCGGaGGag-------GCGC- -5'
21385 3' -64.7 NC_004812.1 + 154650 0.66 0.570153
Target:  5'- cCCUCCccccgGCGCCCGGCGCg----CgCGCGg -3'
miRNA:   3'- -GGAGG-----CGCGGGUCGCGgaggaG-GCGC- -5'
21385 3' -64.7 NC_004812.1 + 1599 0.66 0.570153
Target:  5'- gCUCCcCGCCUccgGGCGCC-CCg-CGCGa -3'
miRNA:   3'- gGAGGcGCGGG---UCGCGGaGGagGCGC- -5'
21385 3' -64.7 NC_004812.1 + 131049 0.66 0.570153
Target:  5'- uCUUCCGCgaGCCCGGCGaggCgC-CCGCGg -3'
miRNA:   3'- -GGAGGCG--CGGGUCGCggaG-GaGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 592 0.66 0.570153
Target:  5'- gCCcCCG-GCCCcgGGCGuccCCUCCcCCGCGc -3'
miRNA:   3'- -GGaGGCgCGGG--UCGC---GGAGGaGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 127107 0.66 0.570153
Target:  5'- gCUCCcCGCCUccgGGCGCC-CCg-CGCGa -3'
miRNA:   3'- gGAGGcGCGGG---UCGCGGaGGagGCGC- -5'
21385 3' -64.7 NC_004812.1 + 29141 0.66 0.570153
Target:  5'- cCCUCCccccgGCGCCCGGCGCg----CgCGCGg -3'
miRNA:   3'- -GGAGG-----CGCGGGUCGCGgaggaG-GCGC- -5'
21385 3' -64.7 NC_004812.1 + 32433 0.66 0.570153
Target:  5'- --gCCGCGCCCAGCcGCC-CCa-CGUa -3'
miRNA:   3'- ggaGGCGCGGGUCG-CGGaGGagGCGc -5'
21385 3' -64.7 NC_004812.1 + 72540 0.66 0.570153
Target:  5'- gCUUCGgugaGCCCGG-GCC-CCUCCGUu -3'
miRNA:   3'- gGAGGCg---CGGGUCgCGGaGGAGGCGc -5'
21385 3' -64.7 NC_004812.1 + 63069 0.66 0.570153
Target:  5'- gCUCCGCcCCCacGGCccCCUCCggCCGCu -3'
miRNA:   3'- gGAGGCGcGGG--UCGc-GGAGGa-GGCGc -5'
21385 3' -64.7 NC_004812.1 + 122054 0.66 0.570153
Target:  5'- cCCcCCGaccCGCUCAGCgguuaauaaaGCUgCCUCCGCGg -3'
miRNA:   3'- -GGaGGC---GCGGGUCG----------CGGaGGAGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 85385 0.66 0.570153
Target:  5'- cCCgCCGCGCCCucGCgGCCgcCCgcucgCCGCc -3'
miRNA:   3'- -GGaGGCGCGGGu-CG-CGGa-GGa----GGCGc -5'
21385 3' -64.7 NC_004812.1 + 126100 0.66 0.570153
Target:  5'- gCCcCCG-GCCCcgGGCGuccCCUCCcCCGCGc -3'
miRNA:   3'- -GGaGGCgCGGG--UCGC---GGAGGaGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 37122 0.66 0.570153
Target:  5'- -gUUgGCGCCC-GCGUCggCCgCCGCGg -3'
miRNA:   3'- ggAGgCGCGGGuCGCGGa-GGaGGCGC- -5'
21385 3' -64.7 NC_004812.1 + 45352 0.66 0.570153
Target:  5'- --cCCGCGCCCAcGgGCCgca-CCGCGu -3'
miRNA:   3'- ggaGGCGCGGGU-CgCGGaggaGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.