miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 146341 0.66 0.850826
Target:  5'- cGCGCCgaaccgugaggGugGUGUugaggagcagcacccCGCcGCGGGCCCAc -3'
miRNA:   3'- cUGUGG-----------UugCACA---------------GCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 87632 0.66 0.847662
Target:  5'- cGGCACCAcuagcCGgaugCGCUGUaucAGGCCCu -3'
miRNA:   3'- -CUGUGGUu----GCaca-GCGACG---UCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 18543 0.66 0.847662
Target:  5'- cGCGCUcGCGgccagCGCggcGCGGGCCCGc -3'
miRNA:   3'- cUGUGGuUGCaca--GCGa--CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 43668 0.66 0.847662
Target:  5'- -uCACCAGCGacacggCGCUGCgcGGGCCg- -3'
miRNA:   3'- cuGUGGUUGCaca---GCGACG--UCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 119935 0.66 0.845269
Target:  5'- gGGCGCCGaccccgcgcugcugACGcUGUCcCUGUGGGCCUg -3'
miRNA:   3'- -CUGUGGU--------------UGC-ACAGcGACGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 150836 0.66 0.845269
Target:  5'- gGGCGCCGaccccgcgcugcugACGcUGUCcCUGUGGGCCUg -3'
miRNA:   3'- -CUGUGGU--------------UGC-ACAGcGACGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 20868 0.66 0.839617
Target:  5'- gGGCgACCAccuCGaUGUCGCccGcCGGGCCCAc -3'
miRNA:   3'- -CUG-UGGUu--GC-ACAGCGa-C-GUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 35681 0.66 0.839617
Target:  5'- uGGCGCC-GCGUG-CGCgGCgccGGGCCUu -3'
miRNA:   3'- -CUGUGGuUGCACaGCGaCG---UCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 25456 0.66 0.839617
Target:  5'- aGGCAgCCGugGUgGUCGC-GCGGGCaCAc -3'
miRNA:   3'- -CUGU-GGUugCA-CAGCGaCGUCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 26717 0.66 0.839617
Target:  5'- cACGCaGGCGcGUCGCacgGCGGGCCg- -3'
miRNA:   3'- cUGUGgUUGCaCAGCGa--CGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 110296 0.66 0.839617
Target:  5'- uGGCGgCGGC-UGUCGCccGCGcGGCCCGc -3'
miRNA:   3'- -CUGUgGUUGcACAGCGa-CGU-CCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 78227 0.66 0.837166
Target:  5'- cGACGCCAgaaagucgcccaccGCGguccuUCGCgggaGCAGGCUCAc -3'
miRNA:   3'- -CUGUGGU--------------UGCac---AGCGa---CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 109315 0.66 0.831384
Target:  5'- cGCGCCGGCGg--CGCUGgAGGCg-- -3'
miRNA:   3'- cUGUGGUUGCacaGCGACgUCCGggu -5'
21385 5' -57.6 NC_004812.1 + 79352 0.66 0.831384
Target:  5'- aGCGCCAGCGgcgccccCGCgaggGCAGcGCCCc -3'
miRNA:   3'- cUGUGGUUGCaca----GCGa---CGUC-CGGGu -5'
21385 5' -57.6 NC_004812.1 + 42305 0.66 0.831384
Target:  5'- cGACGCCGAUGUcauuUCGCgcccGCAG-CCCGg -3'
miRNA:   3'- -CUGUGGUUGCAc---AGCGa---CGUCcGGGU- -5'
21385 5' -57.6 NC_004812.1 + 57232 0.66 0.831384
Target:  5'- aGCGCCGACacggCGCUGC-GGCUCGg -3'
miRNA:   3'- cUGUGGUUGcacaGCGACGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 101221 0.66 0.831384
Target:  5'- cGACGCaCAucgguucauGCGUGccUCGCUGCugcGGCaCCAc -3'
miRNA:   3'- -CUGUG-GU---------UGCAC--AGCGACGu--CCG-GGU- -5'
21385 5' -57.6 NC_004812.1 + 74157 0.66 0.831384
Target:  5'- cGGCGCCAACGUGuUCGCccugGCGcgcgaguacGGCUa- -3'
miRNA:   3'- -CUGUGGUUGCAC-AGCGa---CGU---------CCGGgu -5'
21385 5' -57.6 NC_004812.1 + 80840 0.66 0.831384
Target:  5'- gGGCACCGugGUGgUGCcgaGC-GGCCCc -3'
miRNA:   3'- -CUGUGGUugCACaGCGa--CGuCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 142211 0.66 0.831384
Target:  5'- -cCGCCGGCGUcGUCG-UGCuGGCCg- -3'
miRNA:   3'- cuGUGGUUGCA-CAGCgACGuCCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.