miRNA display CGI


Results 1 - 20 of 729 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 3' -60.6 NC_004812.1 + 25877 0.66 0.775523
Target:  5'- uGGCgGCGGccGGCccuccCGCgGCGcCcGCGCCCa -3'
miRNA:   3'- -CCG-CGCC--UCGa----GCG-CGCaGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 11936 0.66 0.775523
Target:  5'- cGGgGCGGGGgUgGCGgGUUccuccguccCGCCCu -3'
miRNA:   3'- -CCgCGCCUCgAgCGCgCAGau-------GCGGG- -5'
21386 3' -60.6 NC_004812.1 + 72491 0.66 0.775523
Target:  5'- cGGCGCcucggggucGGGGggCGCGCcgccgccgggGUCcgggccgGCGCCCg -3'
miRNA:   3'- -CCGCG---------CCUCgaGCGCG----------CAGa------UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 73842 0.66 0.775523
Target:  5'- --aGCGGcacccGaCUCGCGCGUCaGCGUCg -3'
miRNA:   3'- ccgCGCCu----C-GAGCGCGCAGaUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 71079 0.66 0.775523
Target:  5'- cGGCGCGGGGCguUCG-GCGaCcgGUGCCUc -3'
miRNA:   3'- -CCGCGCCUCG--AGCgCGCaGa-UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 4795 0.66 0.775523
Target:  5'- cGGgGCGaGGGCUgGUGCGg--GCGCg- -3'
miRNA:   3'- -CCgCGC-CUCGAgCGCGCagaUGCGgg -5'
21386 3' -60.6 NC_004812.1 + 6172 0.66 0.775523
Target:  5'- gGGCgGCGGGGgUUGgguCGCGgaggCccgggGCGCCCg -3'
miRNA:   3'- -CCG-CGCCUCgAGC---GCGCa---Ga----UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 123093 0.66 0.775523
Target:  5'- cGGgGCGGGGC-CgGCGCGgaga-GUCCg -3'
miRNA:   3'- -CCgCGCCUCGaG-CGCGCagaugCGGG- -5'
21386 3' -60.6 NC_004812.1 + 105042 0.66 0.775523
Target:  5'- cGGCGCcuccGGCU-GCGCGU--GCGCUCg -3'
miRNA:   3'- -CCGCGcc--UCGAgCGCGCAgaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 66570 0.66 0.775523
Target:  5'- cGGCGgaGGgacgAGCggcUGCGCGUCgauCGCCg -3'
miRNA:   3'- -CCGCg-CC----UCGa--GCGCGCAGau-GCGGg -5'
21386 3' -60.6 NC_004812.1 + 7914 0.66 0.775523
Target:  5'- aGGUGUcgGGGGCUgcggCGCGCGcCggcGCGgCCg -3'
miRNA:   3'- -CCGCG--CCUCGA----GCGCGCaGa--UGCgGG- -5'
21386 3' -60.6 NC_004812.1 + 51540 0.66 0.775523
Target:  5'- cGGCGCcggGGGGCcagUGUGCGcCcGCGgCCg -3'
miRNA:   3'- -CCGCG---CCUCGa--GCGCGCaGaUGCgGG- -5'
21386 3' -60.6 NC_004812.1 + 136573 0.66 0.775523
Target:  5'- uGGCcuacCGGGacGCUCGcCGCcUCUACGCUg -3'
miRNA:   3'- -CCGc---GCCU--CGAGC-GCGcAGAUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 94275 0.66 0.775523
Target:  5'- gGGCGCGcGccgcGGCcCGgGCGU--GCGCCUg -3'
miRNA:   3'- -CCGCGC-C----UCGaGCgCGCAgaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 17100 0.66 0.775523
Target:  5'- -cCG-GGGGUUCGCGUucgccgucGUCUugGCCa -3'
miRNA:   3'- ccGCgCCUCGAGCGCG--------CAGAugCGGg -5'
21386 3' -60.6 NC_004812.1 + 8351 0.66 0.775523
Target:  5'- gGGCGCGGccGCcCcacCGCGUCgGCGgCCg -3'
miRNA:   3'- -CCGCGCCu-CGaGc--GCGCAGaUGCgGG- -5'
21386 3' -60.6 NC_004812.1 + 153994 0.66 0.775523
Target:  5'- cGGgGCGGGGC-CgGCGCGgaga-GUCCg -3'
miRNA:   3'- -CCgCGCCUCGaG-CGCGCagaugCGGG- -5'
21386 3' -60.6 NC_004812.1 + 7637 0.66 0.775523
Target:  5'- cGGCGgcCGGGGUcgggGCGCGaagCUGCggGCCCg -3'
miRNA:   3'- -CCGC--GCCUCGag--CGCGCa--GAUG--CGGG- -5'
21386 3' -60.6 NC_004812.1 + 50131 0.66 0.775523
Target:  5'- -uCGCGGGGCUCauCGCGU--GCGCgCa -3'
miRNA:   3'- ccGCGCCUCGAGc-GCGCAgaUGCGgG- -5'
21386 3' -60.6 NC_004812.1 + 94325 0.66 0.775523
Target:  5'- uGCGCGGcGGUgaccgCGUGgGUCUccGCGCgCg -3'
miRNA:   3'- cCGCGCC-UCGa----GCGCgCAGA--UGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.