miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 3' -63.7 NC_004812.1 + 136499 0.66 0.616911
Target:  5'- uCCCCCGCGCGCCgcugcgcgCGGCgCGc----- -3'
miRNA:   3'- cGGGGGCGCGUGGa-------GCCG-GCacagca -5'
21388 3' -63.7 NC_004812.1 + 142383 0.66 0.616911
Target:  5'- -aCCCgGCGCGCCgUGGCCGccgGgggCGg -3'
miRNA:   3'- cgGGGgCGCGUGGaGCCGGCa--Ca--GCa -5'
21388 3' -63.7 NC_004812.1 + 106327 0.66 0.616911
Target:  5'- cGCCCCCGCGCagACC-CG-CCGguUCGc -3'
miRNA:   3'- -CGGGGGCGCG--UGGaGCcGGCacAGCa -5'
21388 3' -63.7 NC_004812.1 + 118455 0.66 0.616911
Target:  5'- gGCCCCgGCGCGgUgcaGGCCacGUGgcgCGUg -3'
miRNA:   3'- -CGGGGgCGCGUgGag-CCGG--CACa--GCA- -5'
21388 3' -63.7 NC_004812.1 + 73103 0.66 0.616911
Target:  5'- gGCCugCUCGCGCACCgccUGGCCGUcgCGc -3'
miRNA:   3'- -CGG--GGGCGCGUGGa--GCCGGCAcaGCa -5'
21388 3' -63.7 NC_004812.1 + 79835 0.66 0.616911
Target:  5'- aUCCCCGCGCGCCUaUGGUgaccaggGUGUaCGa -3'
miRNA:   3'- cGGGGGCGCGUGGA-GCCGg------CACA-GCa -5'
21388 3' -63.7 NC_004812.1 + 14785 0.66 0.616911
Target:  5'- cGUCCCCGCcgacccGCGCCaUGGCCGag-CGg -3'
miRNA:   3'- -CGGGGGCG------CGUGGaGCCGGCacaGCa -5'
21388 3' -63.7 NC_004812.1 + 99688 0.66 0.613061
Target:  5'- cGCCCCCGCcucCGCCagggacucggucgCGGCCGcGgCGUa -3'
miRNA:   3'- -CGGGGGCGc--GUGGa------------GCCGGCaCaGCA- -5'
21388 3' -63.7 NC_004812.1 + 10326 0.66 0.607289
Target:  5'- cGUCCCaucCGCACCagaaaaucggCGGCCGUcucGUCGUc -3'
miRNA:   3'- -CGGGGgc-GCGUGGa---------GCCGGCA---CAGCA- -5'
21388 3' -63.7 NC_004812.1 + 29592 0.66 0.607289
Target:  5'- uGCCCUCGCGCGgCggcgCGGgCCG-GcCGg -3'
miRNA:   3'- -CGGGGGCGCGUgGa---GCC-GGCaCaGCa -5'
21388 3' -63.7 NC_004812.1 + 102400 0.66 0.607289
Target:  5'- cGCCCCCGUGC-CCUUcgaGGagGUGaUCGa -3'
miRNA:   3'- -CGGGGGCGCGuGGAG---CCggCAC-AGCa -5'
21388 3' -63.7 NC_004812.1 + 69586 0.66 0.607289
Target:  5'- cGCCUCCGaGCGCgaCGGCgGUGgcccgCGg -3'
miRNA:   3'- -CGGGGGCgCGUGgaGCCGgCACa----GCa -5'
21388 3' -63.7 NC_004812.1 + 47924 0.66 0.607289
Target:  5'- -aCCCCGCGuUACCagCGGCCGgccCGg -3'
miRNA:   3'- cgGGGGCGC-GUGGa-GCCGGCacaGCa -5'
21388 3' -63.7 NC_004812.1 + 155100 0.66 0.607289
Target:  5'- uGCCCUCGCGCGgCggcgCGGgCCG-GcCGg -3'
miRNA:   3'- -CGGGGGCGCGUgGa---GCC-GGCaCaGCa -5'
21388 3' -63.7 NC_004812.1 + 137590 0.66 0.607289
Target:  5'- uGCCgCCCGCGCugCgccggcccgCGGCCGcgGgccucCGg -3'
miRNA:   3'- -CGG-GGGCGCGugGa--------GCCGGCa-Ca----GCa -5'
21388 3' -63.7 NC_004812.1 + 103469 0.66 0.597684
Target:  5'- aCCCCaaCGCcauCGCCUCGGCCaccGUCGg -3'
miRNA:   3'- cGGGG--GCGc--GUGGAGCCGGca-CAGCa -5'
21388 3' -63.7 NC_004812.1 + 127398 0.66 0.597684
Target:  5'- gGUCCCCGagcaGCACCgCGGCgagaaaguaCGUGgCGUg -3'
miRNA:   3'- -CGGGGGCg---CGUGGaGCCG---------GCACaGCA- -5'
21388 3' -63.7 NC_004812.1 + 17900 0.66 0.597684
Target:  5'- gGCCCgCCGCGC-CCgCGGUCGUc-CGg -3'
miRNA:   3'- -CGGG-GGCGCGuGGaGCCGGCAcaGCa -5'
21388 3' -63.7 NC_004812.1 + 43982 0.66 0.597684
Target:  5'- aGUCCCCGCGguCGCCcgacCGGCCGgccuccUCGg -3'
miRNA:   3'- -CGGGGGCGC--GUGGa---GCCGGCac----AGCa -5'
21388 3' -63.7 NC_004812.1 + 36538 0.66 0.597684
Target:  5'- cGCCgCCGUG-GCCacggCGGCCGUGUa-- -3'
miRNA:   3'- -CGGgGGCGCgUGGa---GCCGGCACAgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.