miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 5' -54.8 NC_004812.1 + 135226 0.66 0.948589
Target:  5'- ---cGAGAcGGCCGCGG-CGCGg---- -3'
miRNA:   3'- gguaUUCU-CCGGCGCCuGCGCaucuu -5'
21388 5' -54.8 NC_004812.1 + 40484 0.66 0.948589
Target:  5'- cCCuc--GGGGCCcgggccccgaggGCGGGCGCGggGGAGg -3'
miRNA:   3'- -GGuauuCUCCGG------------CGCCUGCGCa-UCUU- -5'
21388 5' -54.8 NC_004812.1 + 8381 0.66 0.948589
Target:  5'- gCCGgggcccGGGGuCCGgGGGCGCGgcGGGg -3'
miRNA:   3'- -GGUauu---CUCC-GGCgCCUGCGCauCUU- -5'
21388 5' -54.8 NC_004812.1 + 62920 0.66 0.948589
Target:  5'- aCCGccGGGGGaCgGCGGugGCGaGGGc -3'
miRNA:   3'- -GGUauUCUCC-GgCGCCugCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 39282 0.66 0.948589
Target:  5'- gCCGgggcccGGGGuCCGgGGGCGCGgcGGGg -3'
miRNA:   3'- -GGUauu---CUCC-GGCgCCUGCGCauCUU- -5'
21388 5' -54.8 NC_004812.1 + 139269 0.66 0.948589
Target:  5'- uCCugagGAGcAGGCaGCGGACGCGaucGAAg -3'
miRNA:   3'- -GGua--UUC-UCCGgCGCCUGCGCau-CUU- -5'
21388 5' -54.8 NC_004812.1 + 54430 0.66 0.948589
Target:  5'- aCCGUGgcgccGGucGGCgGCGGGCaGaCGUAGAAg -3'
miRNA:   3'- -GGUAU-----UCu-CCGgCGCCUG-C-GCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 82076 0.66 0.948589
Target:  5'- gCCA--GGAGGaUCGaGGGCGCGUGGc- -3'
miRNA:   3'- -GGUauUCUCC-GGCgCCUGCGCAUCuu -5'
21388 5' -54.8 NC_004812.1 + 138415 0.66 0.94816
Target:  5'- --cUGGGGGGUCGCGGAgacgccgucggacCGCGgGGAc -3'
miRNA:   3'- gguAUUCUCCGGCGCCU-------------GCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 30415 0.66 0.944191
Target:  5'- gCCG-AGGAGGCCG-GGcCGCG-GGAGc -3'
miRNA:   3'- -GGUaUUCUCCGGCgCCuGCGCaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 33948 0.66 0.944191
Target:  5'- gCCucggGGGGGGCCGgGGuCGCGg---- -3'
miRNA:   3'- -GGua--UUCUCCGGCgCCuGCGCaucuu -5'
21388 5' -54.8 NC_004812.1 + 114487 0.66 0.944191
Target:  5'- gCCGggggAAG-GGCgGCGGGCGaCGgcGGAc -3'
miRNA:   3'- -GGUa---UUCuCCGgCGCCUGC-GCauCUU- -5'
21388 5' -54.8 NC_004812.1 + 155923 0.66 0.944191
Target:  5'- gCCG-AGGAGGCCG-GGcCGCG-GGAGc -3'
miRNA:   3'- -GGUaUUCUCCGGCgCCuGCGCaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 40136 0.66 0.944191
Target:  5'- cUCcgGAGGGGCCGgGGugGCc----- -3'
miRNA:   3'- -GGuaUUCUCCGGCgCCugCGcaucuu -5'
21388 5' -54.8 NC_004812.1 + 72053 0.66 0.944191
Target:  5'- ---cGGGGGGUCGgGGGCGC-UGGGGg -3'
miRNA:   3'- gguaUUCUCCGGCgCCUGCGcAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 48163 0.66 0.944191
Target:  5'- gCCGggcGGcGGCCGCGG-CGC-UGGAGa -3'
miRNA:   3'- -GGUau-UCuCCGGCGCCuGCGcAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 71225 0.66 0.944191
Target:  5'- ---cGGGcGGCCGCgaGGGCGCGgcgGGGAc -3'
miRNA:   3'- gguaUUCuCCGGCG--CCUGCGCa--UCUU- -5'
21388 5' -54.8 NC_004812.1 + 30788 0.66 0.944191
Target:  5'- cCCGccUGcGGGGCCGCGGGC-CGaGGGc -3'
miRNA:   3'- -GGU--AUuCUCCGGCGCCUGcGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 104162 0.66 0.944191
Target:  5'- ---cAGGAGGCgaCGCGGGCGgGgGGAu -3'
miRNA:   3'- gguaUUCUCCG--GCGCCUGCgCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 93456 0.66 0.944191
Target:  5'- cCCcgAGGAGGCCGCGG-CGg------ -3'
miRNA:   3'- -GGuaUUCUCCGGCGCCuGCgcaucuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.