miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 5' -54.5 NC_004812.1 + 21176 0.66 0.962422
Target:  5'- gGGaCGCCGAGGcgcGCGUCGUGgcCGa-- -3'
miRNA:   3'- -CC-GCGGCUUCu--CGUAGCGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 44015 0.66 0.962422
Target:  5'- cGGaGCCGggG-GCGUCGUccgCGUCc -3'
miRNA:   3'- -CCgCGGCuuCuCGUAGCGcaaGCAGu -5'
21390 5' -54.5 NC_004812.1 + 104078 0.66 0.962422
Target:  5'- cGGCaagGUCGucauGGGCAUCGUGgggggCGUCGu -3'
miRNA:   3'- -CCG---CGGCuu--CUCGUAGCGCaa---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 13293 0.66 0.962422
Target:  5'- cGGCGCgGcGGGGCGUCcGCGUcucCGcCGc -3'
miRNA:   3'- -CCGCGgCuUCUCGUAG-CGCAa--GCaGU- -5'
21390 5' -54.5 NC_004812.1 + 145139 0.66 0.962422
Target:  5'- cGGCggGCUGuacguGuGCGUCGUGUaCGUCAa -3'
miRNA:   3'- -CCG--CGGCuu---CuCGUAGCGCAaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 67100 0.66 0.962422
Target:  5'- cGGCGCgaugcaguCGAAGAGgcUCGUGUugUUGUCGg -3'
miRNA:   3'- -CCGCG--------GCUUCUCguAGCGCA--AGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 138893 0.66 0.962422
Target:  5'- cGGCGCCGcAGAGCcugcugGUCG-GUcUGUCc -3'
miRNA:   3'- -CCGCGGCuUCUCG------UAGCgCAaGCAGu -5'
21390 5' -54.5 NC_004812.1 + 58323 0.66 0.962422
Target:  5'- cGCGCCGggGuGC-UCGuCGaucgCGUCc -3'
miRNA:   3'- cCGCGGCuuCuCGuAGC-GCaa--GCAGu -5'
21390 5' -54.5 NC_004812.1 + 35812 0.66 0.962422
Target:  5'- cGGgGCCGuggggcuGGGCGUCGC---CGUCGc -3'
miRNA:   3'- -CCgCGGCuu-----CUCGUAGCGcaaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 8636 0.66 0.962422
Target:  5'- cGGCGCCauGAgcacGGAGCGcCGCGggggCGUgGa -3'
miRNA:   3'- -CCGCGG--CU----UCUCGUaGCGCaa--GCAgU- -5'
21390 5' -54.5 NC_004812.1 + 70961 0.66 0.961731
Target:  5'- cGGCGCCucgaccugcccgGGAGAGCAcCGCGgggcccgcggGUCGg -3'
miRNA:   3'- -CCGCGG------------CUUCUCGUaGCGCaag-------CAGU- -5'
21390 5' -54.5 NC_004812.1 + 148933 0.66 0.961382
Target:  5'- cGGCGUCGGcgacgacgguggucGGGGCGcgagaGCGggUCGUCGg -3'
miRNA:   3'- -CCGCGGCU--------------UCUCGUag---CGCa-AGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 23425 0.66 0.961382
Target:  5'- cGGCGUCGGcgacgacgguggucGGGGCGcgagaGCGggUCGUCGg -3'
miRNA:   3'- -CCGCGGCU--------------UCUCGUag---CGCa-AGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 98551 0.66 0.960322
Target:  5'- gGGCGCCGAGGGaguccacgcGCuccccgcccagcacgAggggCGCGUcCGUCAg -3'
miRNA:   3'- -CCGCGGCUUCU---------CG---------------Ua---GCGCAaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 2297 0.66 0.958878
Target:  5'- cGGCGUCGggGuccggcucgAGCAgggCGCGcgCG-CAg -3'
miRNA:   3'- -CCGCGGCuuC---------UCGUa--GCGCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 56439 0.66 0.958878
Target:  5'- aGGCGCCGGGcGAuCGUCGCccccugGUUggcCGUCAc -3'
miRNA:   3'- -CCGCGGCUU-CUcGUAGCG------CAA---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 124678 0.66 0.958878
Target:  5'- uGGCcCCGggGAGCGagcggcCGCGgUCGcUCGu -3'
miRNA:   3'- -CCGcGGCuuCUCGUa-----GCGCaAGC-AGU- -5'
21390 5' -54.5 NC_004812.1 + 127805 0.66 0.958878
Target:  5'- cGGCGUCGggGuccggcucgAGCAgggCGCGcgCG-CAg -3'
miRNA:   3'- -CCGCGGCuuC---------UCGUa--GCGCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 90506 0.66 0.958878
Target:  5'- gGGCGCgGGgagGGGGCGUC-CGgucacUCGUCc -3'
miRNA:   3'- -CCGCGgCU---UCUCGUAGcGCa----AGCAGu -5'
21390 5' -54.5 NC_004812.1 + 139958 0.66 0.955111
Target:  5'- gGGgGCCgGGAGcgcgcGGCGUgGCGgaCGUCGg -3'
miRNA:   3'- -CCgCGG-CUUC-----UCGUAgCGCaaGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.