miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 154935 0.66 0.931033
Target:  5'- cGCCgcgggCGGGccgcGGCGCCGCGgCCa -3'
miRNA:   3'- cUGGaaguaGCCUu---CCGUGGCGUgGG- -5'
21392 3' -55.7 NC_004812.1 + 84755 0.66 0.931033
Target:  5'- -uCCUgcaggggaUCGUgCGGGcGGGCcgcccggccGCCGCACCCu -3'
miRNA:   3'- cuGGA--------AGUA-GCCU-UCCG---------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 97308 0.66 0.931033
Target:  5'- cGACCacgagcUCGcggCGGGcGGGUGCCGCgcGCCCg -3'
miRNA:   3'- -CUGGa-----AGUa--GCCU-UCCGUGGCG--UGGG- -5'
21392 3' -55.7 NC_004812.1 + 72855 0.66 0.931033
Target:  5'- cGGCgaUCAgcgCGGAcagcgcGGGCAgCUGCGCCg -3'
miRNA:   3'- -CUGgaAGUa--GCCU------UCCGU-GGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 117442 0.66 0.931033
Target:  5'- ---aUUCGUCGGccGGCcCCcgGCGCCCc -3'
miRNA:   3'- cuggAAGUAGCCuuCCGuGG--CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 148343 0.66 0.931033
Target:  5'- ---aUUCGUCGGccGGCcCCcgGCGCCCc -3'
miRNA:   3'- cuggAAGUAGCCuuCCGuGG--CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 124034 0.66 0.931033
Target:  5'- cGCCgcgggCGGGccgcGGCGCCGCGgCCa -3'
miRNA:   3'- cUGGaaguaGCCUu---CCGUGGCGUgGG- -5'
21392 3' -55.7 NC_004812.1 + 90679 0.66 0.931033
Target:  5'- -gUCUUgGUagaugGGGAGGCGCUugagcaGCACCCa -3'
miRNA:   3'- cuGGAAgUAg----CCUUCCGUGG------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 73223 0.66 0.931033
Target:  5'- cGGCCgcccugcgggUCGggCGGgcGGC-CCGCcCCCa -3'
miRNA:   3'- -CUGGa---------AGUa-GCCuuCCGuGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 87058 0.66 0.93052
Target:  5'- cGGCCggcgCcgCGGGcaggggcgcggggGGGCgGCCGgACCCg -3'
miRNA:   3'- -CUGGaa--GuaGCCU-------------UCCG-UGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 66738 0.66 0.93052
Target:  5'- cGAUCaggaUCAUCaGGAugaacuucucGGGCACCgacucgcacgccuGCACCCg -3'
miRNA:   3'- -CUGGa---AGUAG-CCU----------UCCGUGG-------------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 46536 0.66 0.930004
Target:  5'- gGGCCUcuccguacucccCGUCGGGcccgagccccGGGuCGCCGCGCaCCg -3'
miRNA:   3'- -CUGGAa-----------GUAGCCU----------UCC-GUGGCGUG-GG- -5'
21392 3' -55.7 NC_004812.1 + 141931 0.66 0.929486
Target:  5'- aGCCUgcaggCcgCGGGguggcacggcccgaAGGCGCCguucacgaGCACCCu -3'
miRNA:   3'- cUGGAa----GuaGCCU--------------UCCGUGG--------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 116778 0.66 0.927917
Target:  5'- gGGCUUUUAUCuccuGGcaaccggccccaagcAGGGCACCGUGCCa -3'
miRNA:   3'- -CUGGAAGUAG----CC---------------UUCCGUGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 77752 0.66 0.926327
Target:  5'- cGGCCUccgcccuccccgggcUCcUCGGggGaCACCGCcgccacggucagggGCCCg -3'
miRNA:   3'- -CUGGA---------------AGuAGCCuuCcGUGGCG--------------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 49015 0.66 0.925792
Target:  5'- cGGCCgggccCAcgCGGAcgAGGUcaACCGCGCCg -3'
miRNA:   3'- -CUGGaa---GUa-GCCU--UCCG--UGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 48260 0.66 0.925792
Target:  5'- gGACCgggUCA-CGG-GGGCGCUGgagGCCCu -3'
miRNA:   3'- -CUGGa--AGUaGCCuUCCGUGGCg--UGGG- -5'
21392 3' -55.7 NC_004812.1 + 13287 0.66 0.925792
Target:  5'- aGGCCU-CGgcgCGGcGGGGCguccgcgucuccGCCGCGCCg -3'
miRNA:   3'- -CUGGAaGUa--GCC-UUCCG------------UGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 117113 0.66 0.925792
Target:  5'- uGACCaagcUCAUCGac---CGCCGCACCCu -3'
miRNA:   3'- -CUGGa---AGUAGCcuuccGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 97141 0.66 0.925792
Target:  5'- gGGCCgUCAUgcaGGAGacGUACCGCGCCg -3'
miRNA:   3'- -CUGGaAGUAg--CCUUc-CGUGGCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.