miRNA display CGI


Results 1 - 20 of 347 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21393 5' -60.9 NC_004812.1 + 111227 0.66 0.735691
Target:  5'- uUCgGGGCGAaccccgcccaccGCUgcaucuacgcGGUGCGgcCCGUGGGCg -3'
miRNA:   3'- gAG-CCCGCU------------CGA----------CCACGU--GGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 6538 0.66 0.735691
Target:  5'- -gCGGG-GGGCcgagGGgGCuGCCGCGAGUc -3'
miRNA:   3'- gaGCCCgCUCGa---CCaCG-UGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 89763 0.66 0.735691
Target:  5'- -----aCGAGCaGGcGCGCCGCGAGUa -3'
miRNA:   3'- gagcccGCUCGaCCaCGUGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 20128 0.66 0.735691
Target:  5'- -gCGGGgGAGCggaccGG-GCcccgGCCGgGAGCu -3'
miRNA:   3'- gaGCCCgCUCGa----CCaCG----UGGCgCUCG- -5'
21393 5' -60.9 NC_004812.1 + 93 0.66 0.735691
Target:  5'- --aGGGaCGGGCcGGgGCGCgCGCGGGg -3'
miRNA:   3'- gagCCC-GCUCGaCCaCGUG-GCGCUCg -5'
21393 5' -60.9 NC_004812.1 + 37439 0.66 0.735691
Target:  5'- -gCGGG-GGGCcgagGGgGCuGCCGCGAGUc -3'
miRNA:   3'- gaGCCCgCUCGa---CCaCG-UGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 104304 0.66 0.735691
Target:  5'- -gCGGGCGAcgGCgGGgacgGCGCCuccGgGGGCg -3'
miRNA:   3'- gaGCCCGCU--CGaCCa---CGUGG---CgCUCG- -5'
21393 5' -60.9 NC_004812.1 + 101923 0.66 0.735691
Target:  5'- gUCGGGCcucgGGGCcccGGacgcGCGgCGCGGGCg -3'
miRNA:   3'- gAGCCCG----CUCGa--CCa---CGUgGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 37111 0.66 0.735691
Target:  5'- gUCGaGGCGGuGUUGGcGC-CCGCGucGGCc -3'
miRNA:   3'- gAGC-CCGCU-CGACCaCGuGGCGC--UCG- -5'
21393 5' -60.9 NC_004812.1 + 12901 0.66 0.735691
Target:  5'- gCUCGGuGCccccgGGGCg---GCGCgGCGAGCg -3'
miRNA:   3'- -GAGCC-CG-----CUCGaccaCGUGgCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 84338 0.66 0.735691
Target:  5'- -cCGGGCGggggcaggcggaAGCggGGUGCGgUgGCGGGCc -3'
miRNA:   3'- gaGCCCGC------------UCGa-CCACGUgG-CGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 122037 0.66 0.735691
Target:  5'- -cCGGGCGGGacuUGG-GCGCCggGCGGGn -3'
miRNA:   3'- gaGCCCGCUCg--ACCaCGUGG--CGCUCg -5'
21393 5' -60.9 NC_004812.1 + 156503 0.66 0.735691
Target:  5'- --aGGGaCGGGCcGGgGCGCgCGCGGGg -3'
miRNA:   3'- gagCCC-GCUCGaCCaCGUG-GCGCUCg -5'
21393 5' -60.9 NC_004812.1 + 152938 0.66 0.735691
Target:  5'- -cCGGGCGGGacuUGG-GCGCCggGCGGGn -3'
miRNA:   3'- gaGCCCGCUCg--ACCaCGUGG--CGCUCg -5'
21393 5' -60.9 NC_004812.1 + 111515 0.66 0.735691
Target:  5'- aUCGcGGUGAGCUGGUuccuGUACCugGCGuucGUg -3'
miRNA:   3'- gAGC-CCGCUCGACCA----CGUGG--CGCu--CG- -5'
21393 5' -60.9 NC_004812.1 + 30994 0.66 0.735691
Target:  5'- --aGGGaCGGGCcGGgGCGCgCGCGGGg -3'
miRNA:   3'- gagCCC-GCUCGaCCaCGUG-GCGCUCg -5'
21393 5' -60.9 NC_004812.1 + 147473 0.66 0.735691
Target:  5'- --gGGGauaGAGCaGGgcgaccgugGCGCCGCGGGg -3'
miRNA:   3'- gagCCCg--CUCGaCCa--------CGUGGCGCUCg -5'
21393 5' -60.9 NC_004812.1 + 104809 0.66 0.735691
Target:  5'- --gGGGCGGuGCUGaaGUGCagcuucuucGCCGCG-GCg -3'
miRNA:   3'- gagCCCGCU-CGAC--CACG---------UGGCGCuCG- -5'
21393 5' -60.9 NC_004812.1 + 109320 0.66 0.734747
Target:  5'- ---cGGCGGcGCUGGaggcgGCGCCGCGcuaccggGGCg -3'
miRNA:   3'- gagcCCGCU-CGACCa----CGUGGCGC-------UCG- -5'
21393 5' -60.9 NC_004812.1 + 123849 0.66 0.731909
Target:  5'- -aCGGGCGAGUgcgaccccugggccUcGGUGUucgccgcguacauGCCGCGGGa -3'
miRNA:   3'- gaGCCCGCUCG--------------A-CCACG-------------UGGCGCUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.