miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21394 3' -53 NC_004812.1 + 40094 0.66 0.98666
Target:  5'- cGGCgGGCGGC-CGGGCgcgCGuCCGUCc- -3'
miRNA:   3'- -CCG-UUGCUGuGUCUGa--GCuGGCAGcu -5'
21394 3' -53 NC_004812.1 + 137201 0.66 0.98666
Target:  5'- cGGCcACG-CGCAGGCcgUGACCG-CGc -3'
miRNA:   3'- -CCGuUGCuGUGUCUGa-GCUGGCaGCu -5'
21394 3' -53 NC_004812.1 + 77313 0.66 0.98666
Target:  5'- cGGCGACGACGCcgaagacgacgaGGACggGGCCaUgGAa -3'
miRNA:   3'- -CCGUUGCUGUG------------UCUGagCUGGcAgCU- -5'
21394 3' -53 NC_004812.1 + 26031 0.66 0.98666
Target:  5'- cGGCGACGGCGgGGcCggGGCCGggggcgCGGc -3'
miRNA:   3'- -CCGUUGCUGUgUCuGagCUGGCa-----GCU- -5'
21394 3' -53 NC_004812.1 + 111737 0.66 0.98666
Target:  5'- cGGguGCGACGCcgcGCUCGugCG-CGc -3'
miRNA:   3'- -CCguUGCUGUGuc-UGAGCugGCaGCu -5'
21394 3' -53 NC_004812.1 + 98168 0.66 0.98666
Target:  5'- gGGCGACGACAgCAccGGCggcuccgCGGCCGcuuccaUCGGc -3'
miRNA:   3'- -CCGUUGCUGU-GU--CUGa------GCUGGC------AGCU- -5'
21394 3' -53 NC_004812.1 + 59651 0.66 0.98666
Target:  5'- gGGgGAUGAgACGGACg-GGCCGgcgCGGg -3'
miRNA:   3'- -CCgUUGCUgUGUCUGagCUGGCa--GCU- -5'
21394 3' -53 NC_004812.1 + 151540 0.66 0.98666
Target:  5'- cGGCGACGGCGgGGcCggGGCCGggggcgCGGc -3'
miRNA:   3'- -CCGUUGCUGUgUCuGagCUGGCa-----GCU- -5'
21394 3' -53 NC_004812.1 + 26705 0.66 0.98666
Target:  5'- cGGCGACGgauccACGCAGGCgCGucgcacggcggGCCGUgGGc -3'
miRNA:   3'- -CCGUUGC-----UGUGUCUGaGC-----------UGGCAgCU- -5'
21394 3' -53 NC_004812.1 + 33687 0.66 0.98666
Target:  5'- cGCcuCgGGCACcGGCgucgCGGCCGUCGGc -3'
miRNA:   3'- cCGuuG-CUGUGuCUGa---GCUGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 71215 0.66 0.98666
Target:  5'- aGGCGGCGA-GCGGg--CGGCCG-CGAg -3'
miRNA:   3'- -CCGUUGCUgUGUCugaGCUGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 86733 0.66 0.98666
Target:  5'- cGGaCGACGACGgcgaccagcgcCGGGC-CGACCcggucGUCGAg -3'
miRNA:   3'- -CC-GUUGCUGU-----------GUCUGaGCUGG-----CAGCU- -5'
21394 3' -53 NC_004812.1 + 28539 0.66 0.98666
Target:  5'- cGGCAGCGA-GCGGcC-CGACC-UCGGg -3'
miRNA:   3'- -CCGUUGCUgUGUCuGaGCUGGcAGCU- -5'
21394 3' -53 NC_004812.1 + 81396 0.66 0.98666
Target:  5'- uGGUAgGCGGCGCAGuaUCGACugaccgCGUCGGc -3'
miRNA:   3'- -CCGU-UGCUGUGUCugAGCUG------GCAGCU- -5'
21394 3' -53 NC_004812.1 + 106633 0.66 0.98666
Target:  5'- cGcCGAgGACGCAGGCaUCGACauCGUCa- -3'
miRNA:   3'- cC-GUUgCUGUGUCUG-AGCUG--GCAGcu -5'
21394 3' -53 NC_004812.1 + 108493 0.66 0.986499
Target:  5'- cGGuCAACGGCGCcagcgcccgcacgGGGCgcacggcggCGGCCGcCGAg -3'
miRNA:   3'- -CC-GUUGCUGUG-------------UCUGa--------GCUGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 10750 0.66 0.986499
Target:  5'- cGGCGGCGACGCgccugcgcgAGACUccguccccgggccCGGCCuUCGc -3'
miRNA:   3'- -CCGUUGCUGUG---------UCUGA-------------GCUGGcAGCu -5'
21394 3' -53 NC_004812.1 + 138395 0.66 0.986172
Target:  5'- cGGCGccuCGACGCGGAguaCUgGggggucgcggagacGCCGUCGGa -3'
miRNA:   3'- -CCGUu--GCUGUGUCU---GAgC--------------UGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 22806 0.66 0.98567
Target:  5'- gGGCGAaGACgaggggcugaauccgACGGACUCGG-CGUCGu -3'
miRNA:   3'- -CCGUUgCUG---------------UGUCUGAGCUgGCAGCu -5'
21394 3' -53 NC_004812.1 + 53644 0.66 0.984979
Target:  5'- -cCGACGACACcGACUaCGACCc-CGAc -3'
miRNA:   3'- ccGUUGCUGUGuCUGA-GCUGGcaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.