miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21394 5' -61.1 NC_004812.1 + 91145 0.65 0.778493
Target:  5'- cGGUCggggacgGGCGGUcCGgGGgccggggggaccccUCCCcgagGGACGCGg -3'
miRNA:   3'- -CCAG-------CCGCCA-GCgCU--------------AGGG----CCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 31883 0.66 0.773218
Target:  5'- gGGUCcGgGGUCGCcgggGGUCCUGGGgGUc -3'
miRNA:   3'- -CCAGcCgCCAGCG----CUAGGGCCUgCGc -5'
21394 5' -61.1 NC_004812.1 + 31779 0.66 0.773218
Target:  5'- gGGUCcGgGGUCGCcgggGGUCCUGGGgGUc -3'
miRNA:   3'- -CCAGcCgCCAGCG----CUAGGGCCUgCGc -5'
21394 5' -61.1 NC_004812.1 + 129443 0.66 0.773218
Target:  5'- cGG-CGGCGGcacggcgcgCGCGGccgccagCCCGGGCacgGCGg -3'
miRNA:   3'- -CCaGCCGCCa--------GCGCUa------GGGCCUG---CGC- -5'
21394 5' -61.1 NC_004812.1 + 155686 0.66 0.773218
Target:  5'- cGcCGGCGGgcucggCGCGcgCgaGGGCGUGg -3'
miRNA:   3'- cCaGCCGCCa-----GCGCuaGggCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 24679 0.66 0.773218
Target:  5'- aGGUC-GCGGcaCGgGAUCCCGcGAgGCc -3'
miRNA:   3'- -CCAGcCGCCa-GCgCUAGGGC-CUgCGc -5'
21394 5' -61.1 NC_004812.1 + 31831 0.66 0.773218
Target:  5'- gGGUCcGgGGUCGCcgggGGUCCUGGGgGUc -3'
miRNA:   3'- -CCAGcCgCCAGCG----CUAGGGCCUgCGc -5'
21394 5' -61.1 NC_004812.1 + 73893 0.66 0.773218
Target:  5'- -cUCGGCGGcCGCGGcCgCCGaGuCGCGc -3'
miRNA:   3'- ccAGCCGCCaGCGCUaG-GGC-CuGCGC- -5'
21394 5' -61.1 NC_004812.1 + 132525 0.66 0.773218
Target:  5'- --gCGGCGGgucggCGCacauuUCCCccggGGACGCGa -3'
miRNA:   3'- ccaGCCGCCa----GCGcu---AGGG----CCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 878 0.66 0.773218
Target:  5'- gGGUCcGgGGUCGCcgggGGUCCUGGGgGUc -3'
miRNA:   3'- -CCAGcCgCCAGCG----CUAGGGCCUgCGc -5'
21394 5' -61.1 NC_004812.1 + 83798 0.66 0.773218
Target:  5'- cGUCGGUGGg-GUGA-CCgGGGCGgGa -3'
miRNA:   3'- cCAGCCGCCagCGCUaGGgCCUGCgC- -5'
21394 5' -61.1 NC_004812.1 + 83403 0.66 0.773218
Target:  5'- ---gGGCGGcCGCGAggacgUCCCGGcccCGCc -3'
miRNA:   3'- ccagCCGCCaGCGCU-----AGGGCCu--GCGc -5'
21394 5' -61.1 NC_004812.1 + 108272 0.66 0.773218
Target:  5'- -cUCGGCGGcguccgccgccgUUGCGGcCUCGGcCGCGg -3'
miRNA:   3'- ccAGCCGCC------------AGCGCUaGGGCCuGCGC- -5'
21394 5' -61.1 NC_004812.1 + 7016 0.66 0.773218
Target:  5'- --gCGGCGGgucggCGCacauuUCCCccggGGACGCGa -3'
miRNA:   3'- ccaGCCGCCa----GCGcu---AGGG----CCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 72482 0.66 0.773218
Target:  5'- gGGgggCGGCGGcgccUCGgGGUCgggGGGCGCGc -3'
miRNA:   3'- -CCa--GCCGCC----AGCgCUAGgg-CCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 930 0.66 0.773218
Target:  5'- gGGUCcGgGGUCGCcgggGGUCCUGGGgGUc -3'
miRNA:   3'- -CCAGcCgCCAGCG----CUAGGGCCUgCGc -5'
21394 5' -61.1 NC_004812.1 + 100871 0.66 0.773218
Target:  5'- -cUCGGCGaacaggGCG-UCCCGGaACGCGg -3'
miRNA:   3'- ccAGCCGCcag---CGCuAGGGCC-UGCGC- -5'
21394 5' -61.1 NC_004812.1 + 3935 0.66 0.773218
Target:  5'- cGG-CGGCGGcacggcgcgCGCGGccgccagCCCGGGCacgGCGg -3'
miRNA:   3'- -CCaGCCGCCa--------GCGCUa------GGGCCUG---CGC- -5'
21394 5' -61.1 NC_004812.1 + 54600 0.66 0.773218
Target:  5'- cGUCGGCguGGcCGCGGggaCGGGCGgGg -3'
miRNA:   3'- cCAGCCG--CCaGCGCUaggGCCUGCgC- -5'
21394 5' -61.1 NC_004812.1 + 57100 0.66 0.767903
Target:  5'- cGUCGGCgacgcGGcCGCGGUcggCCCcgaugccaugucuguGGGCGCGg -3'
miRNA:   3'- cCAGCCG-----CCaGCGCUA---GGG---------------CCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.