miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21395 5' -56.4 NC_004812.1 + 147859 0.66 0.923689
Target:  5'- cGCGGcuGCcugGGGGGUCGGggCCGuCGAg -3'
miRNA:   3'- cUGCUcuUG---CCCCUAGCCuaGGC-GCU- -5'
21395 5' -56.4 NC_004812.1 + 59625 0.66 0.923689
Target:  5'- cGugGGGGugGGGcGGgagCGG--CCGCGGg -3'
miRNA:   3'- -CugCUCUugCCC-CUa--GCCuaGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 2239 0.66 0.923689
Target:  5'- gGugGGGGucuCGGGGGUCucggGGGUCuCGgGGg -3'
miRNA:   3'- -CugCUCUu--GCCCCUAG----CCUAG-GCgCU- -5'
21395 5' -56.4 NC_004812.1 + 83854 0.66 0.923689
Target:  5'- cGGgGGGAgcgGCGGGGggCGGcgCUGCc- -3'
miRNA:   3'- -CUgCUCU---UGCCCCuaGCCuaGGCGcu -5'
21395 5' -56.4 NC_004812.1 + 13387 0.66 0.923689
Target:  5'- cGCGc---CGGGGGUCGGGggCGCGGc -3'
miRNA:   3'- cUGCucuuGCCCCUAGCCUagGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 33140 0.66 0.923689
Target:  5'- gGugGGGGucuCGGGGGUCucggGGGUCuCGgGGg -3'
miRNA:   3'- -CugCUCUu--GCCCCUAG----CCUAG-GCgCU- -5'
21395 5' -56.4 NC_004812.1 + 79097 0.66 0.923689
Target:  5'- cGCGAaAACGGGGuagCGGcgugCCGCGc -3'
miRNA:   3'- cUGCUcUUGCCCCua-GCCua--GGCGCu -5'
21395 5' -56.4 NC_004812.1 + 16207 0.66 0.923689
Target:  5'- cGGCGAcGGugGGGG--UGGuGUCCGUGGc -3'
miRNA:   3'- -CUGCU-CUugCCCCuaGCC-UAGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 72754 0.66 0.923689
Target:  5'- -cCGGGGGCccggGGGGGUCGGG-CUGCu- -3'
miRNA:   3'- cuGCUCUUG----CCCCUAGCCUaGGCGcu -5'
21395 5' -56.4 NC_004812.1 + 83639 0.66 0.923689
Target:  5'- gGAUGGGGGCGGuGGAcagCaGAaaggCCGCGAu -3'
miRNA:   3'- -CUGCUCUUGCC-CCUa--GcCUa---GGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 36882 0.66 0.923689
Target:  5'- gGGCGAGuacGCGGGGugguaGGcgCCGgGGg -3'
miRNA:   3'- -CUGCUCu--UGCCCCuag--CCuaGGCgCU- -5'
21395 5' -56.4 NC_004812.1 + 138045 0.66 0.918204
Target:  5'- cGGCGGcGGCGGcGGAgCGGGcCCGCGc -3'
miRNA:   3'- -CUGCUcUUGCC-CCUaGCCUaGGCGCu -5'
21395 5' -56.4 NC_004812.1 + 101720 0.66 0.918204
Target:  5'- uGCGAGccgGACGGcGGcAUCGGc-CCGCGGu -3'
miRNA:   3'- cUGCUC---UUGCC-CC-UAGCCuaGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 155549 0.66 0.918204
Target:  5'- gGGCGGGAgggGCGGGGGagGGGggaggggcgCgCGCGGg -3'
miRNA:   3'- -CUGCUCU---UGCCCCUagCCUa--------G-GCGCU- -5'
21395 5' -56.4 NC_004812.1 + 72346 0.66 0.918204
Target:  5'- cGGgGGGGAgGGGGggCGGGgggucucCCGCGu -3'
miRNA:   3'- -CUgCUCUUgCCCCuaGCCUa------GGCGCu -5'
21395 5' -56.4 NC_004812.1 + 78951 0.66 0.918204
Target:  5'- -uCGGGGGugcgcCGGGGGUCGGGggugcgCCGgGGg -3'
miRNA:   3'- cuGCUCUU-----GCCCCUAGCCUa-----GGCgCU- -5'
21395 5' -56.4 NC_004812.1 + 30040 0.66 0.918204
Target:  5'- gGGCGGGAgggGCGGGGGagGGGggaggggcgCgCGCGGg -3'
miRNA:   3'- -CUGCUCU---UGCCCCUagCCUa--------G-GCGCU- -5'
21395 5' -56.4 NC_004812.1 + 102895 0.66 0.918204
Target:  5'- uGCGcGGGGCGGcGGAccggcgccUCGGGggggcggCCGCGAa -3'
miRNA:   3'- cUGC-UCUUGCC-CCU--------AGCCUa------GGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 79338 0.66 0.918204
Target:  5'- gGGCGGGGGCGGGcagcgccagCGGcgcccCCGCGAg -3'
miRNA:   3'- -CUGCUCUUGCCCcua------GCCua---GGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 90065 0.66 0.918204
Target:  5'- cGGC-AGAGCGGGuGuacCGGcuguUCCGCGAg -3'
miRNA:   3'- -CUGcUCUUGCCC-Cua-GCCu---AGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.