miRNA display CGI


Results 1 - 20 of 1016 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21396 3' -60.5 NC_004812.1 + 114113 0.66 0.754769
Target:  5'- cGCCgaGCGCCAGCgcgucgcggaagaguUCGUUgGCGgacucCGCCACg -3'
miRNA:   3'- -CGG--UGCGGUUG---------------GGCAGgCGU-----GCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 126221 0.66 0.754769
Target:  5'- cGCCGCGcCCccggaggagagccccGACCCGgCCGCcgagcggcucgACGCgACg -3'
miRNA:   3'- -CGGUGC-GG---------------UUGGGCaGGCG-----------UGCGgUG- -5'
21396 3' -60.5 NC_004812.1 + 104495 0.66 0.751985
Target:  5'- cGCgAUGCCGaucgGCCCGcgggacgggcggucgUCGCGCGcCCGCg -3'
miRNA:   3'- -CGgUGCGGU----UGGGCa--------------GGCGUGC-GGUG- -5'
21396 3' -60.5 NC_004812.1 + 8895 0.66 0.751055
Target:  5'- aUCACGUaCAGCCC--CC-CGCGCCACa -3'
miRNA:   3'- cGGUGCG-GUUGGGcaGGcGUGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 61045 0.66 0.751055
Target:  5'- aGCgGCGagaCcGCCaCGUCgGCGuCGCCGCu -3'
miRNA:   3'- -CGgUGCg--GuUGG-GCAGgCGU-GCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 59491 0.66 0.751055
Target:  5'- cCCGgGCCGucucgGCCaCGUCgGCGCGCUu- -3'
miRNA:   3'- cGGUgCGGU-----UGG-GCAGgCGUGCGGug -5'
21396 3' -60.5 NC_004812.1 + 33108 0.66 0.751055
Target:  5'- gGCCuuggaGCcCCGGCCCGgcCCGC-CGCCGa -3'
miRNA:   3'- -CGG-----UGcGGUUGGGCa-GGCGuGCGGUg -5'
21396 3' -60.5 NC_004812.1 + 2207 0.66 0.751055
Target:  5'- gGCCuuggaGCcCCGGCCCGgcCCGC-CGCCGa -3'
miRNA:   3'- -CGG-----UGcGGUUGGGCa-GGCGuGCGGUg -5'
21396 3' -60.5 NC_004812.1 + 8428 0.66 0.751055
Target:  5'- cGUgAgGCCGcucACCCuUCCGCucccacCGCCGCg -3'
miRNA:   3'- -CGgUgCGGU---UGGGcAGGCGu-----GCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 14748 0.66 0.751055
Target:  5'- -gCAUGCCGAUgCCGUCCaC-CGUCACg -3'
miRNA:   3'- cgGUGCGGUUG-GGCAGGcGuGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 48317 0.66 0.751055
Target:  5'- gGCCgACGCCGcGgCCGaggCCGCaacggcggcggACGCCGCc -3'
miRNA:   3'- -CGG-UGCGGU-UgGGCa--GGCG-----------UGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 138733 0.66 0.751055
Target:  5'- cCCGCGgCGugCCGgCCGguCGCCcccGCg -3'
miRNA:   3'- cGGUGCgGUugGGCaGGCguGCGG---UG- -5'
21396 3' -60.5 NC_004812.1 + 120188 0.66 0.751055
Target:  5'- gGCC-CGCCGugucCCUG-CUGCGCGgCGCc -3'
miRNA:   3'- -CGGuGCGGUu---GGGCaGGCGUGCgGUG- -5'
21396 3' -60.5 NC_004812.1 + 2219 0.66 0.751055
Target:  5'- cGCCGCgGCCcgcGGCCCagcgCaCGCGCGgCGCg -3'
miRNA:   3'- -CGGUG-CGG---UUGGGca--G-GCGUGCgGUG- -5'
21396 3' -60.5 NC_004812.1 + 62120 0.66 0.751055
Target:  5'- -gCGCGCUGGCCCcggCCGCGaaacCGCCGg -3'
miRNA:   3'- cgGUGCGGUUGGGca-GGCGU----GCGGUg -5'
21396 3' -60.5 NC_004812.1 + 80389 0.66 0.751055
Target:  5'- cGCC-CGCCccCCCuUCCGCGCGgucugcCCAUc -3'
miRNA:   3'- -CGGuGCGGuuGGGcAGGCGUGC------GGUG- -5'
21396 3' -60.5 NC_004812.1 + 122192 0.66 0.751055
Target:  5'- gGUCugGUgGGCgggCUGUCUGgGCGCCGCc -3'
miRNA:   3'- -CGGugCGgUUG---GGCAGGCgUGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 65413 0.66 0.751055
Target:  5'- cGCCGCGCCc-CCCGcccCCGaGC-CCGCg -3'
miRNA:   3'- -CGGUGCGGuuGGGCa--GGCgUGcGGUG- -5'
21396 3' -60.5 NC_004812.1 + 43365 0.66 0.751055
Target:  5'- aGCUcuCGCUGACgCGcUCCGCG-GCCGCg -3'
miRNA:   3'- -CGGu-GCGGUUGgGC-AGGCGUgCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 14219 0.66 0.751055
Target:  5'- gGCCcCGCC--CCCGgcggCCacgGCGCGCCGg -3'
miRNA:   3'- -CGGuGCGGuuGGGCa---GG---CGUGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.