miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21396 5' -57.4 NC_004812.1 + 118406 0.66 0.888493
Target:  5'- -cGUGggGGUcGCGGAUGugGACCUgCCGg -3'
miRNA:   3'- ucCACa-CUA-CGUCUGCugCUGGG-GGC- -5'
21396 5' -57.4 NC_004812.1 + 59419 0.66 0.888493
Target:  5'- cAGGa-UGAgccccGCcaggacGACGACGACCCCCa -3'
miRNA:   3'- -UCCacACUa----CGu-----CUGCUGCUGGGGGc -5'
21396 5' -57.4 NC_004812.1 + 14484 0.66 0.888493
Target:  5'- cGGGgcccugGAUGguGACGucggaGGCCUCCGg -3'
miRNA:   3'- -UCCaca---CUACguCUGCug---CUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 48952 0.66 0.888493
Target:  5'- cGGcGUGcUGCcggccgcccccGGCGACGugCCCCGc -3'
miRNA:   3'- uCCaCACuACGu----------CUGCUGCugGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 122363 0.66 0.881701
Target:  5'- gGGGgccggGgcGCGGggcGCGGCGGCCCCuCGg -3'
miRNA:   3'- -UCCaca--CuaCGUC---UGCUGCUGGGG-GC- -5'
21396 5' -57.4 NC_004812.1 + 67351 0.66 0.881701
Target:  5'- ----cUGGUGCAGACGAUGuugucgUCCCCGc -3'
miRNA:   3'- uccacACUACGUCUGCUGCu-----GGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 104229 0.66 0.881701
Target:  5'- gAGcGUGUG-UGcCAGgugcGCGGCGcGCCCCCa -3'
miRNA:   3'- -UC-CACACuAC-GUC----UGCUGC-UGGGGGc -5'
21396 5' -57.4 NC_004812.1 + 83662 0.66 0.881701
Target:  5'- gAGGUcGUGucguccgacGUGgAGACGugGGCCaCCGa -3'
miRNA:   3'- -UCCA-CAC---------UACgUCUGCugCUGGgGGC- -5'
21396 5' -57.4 NC_004812.1 + 153264 0.66 0.881701
Target:  5'- gGGGgccggGgcGCGGggcGCGGCGGCCCCuCGg -3'
miRNA:   3'- -UCCaca--CuaCGUC---UGCUGCUGGGG-GC- -5'
21396 5' -57.4 NC_004812.1 + 19241 0.66 0.881701
Target:  5'- -cGUG-GAUGUAGuCGAUGGCgCCCa -3'
miRNA:   3'- ucCACaCUACGUCuGCUGCUGgGGGc -5'
21396 5' -57.4 NC_004812.1 + 155585 0.66 0.88101
Target:  5'- gGGGUuguagccgcGUGAcgucaaUGgGGGCGACcccggacccccagGACCCCCGg -3'
miRNA:   3'- -UCCA---------CACU------ACgUCUGCUG-------------CUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 124684 0.66 0.88101
Target:  5'- gGGGUuguagccgcGUGAcgucaaUGgGGGCGACcccggacccccagGACCCCCGg -3'
miRNA:   3'- -UCCA---------CACU------ACgUCUGCUG-------------CUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 141857 0.66 0.880316
Target:  5'- aGGGcGUGAcgGUGGACGGCaucggcaugcuCCCCCGg -3'
miRNA:   3'- -UCCaCACUa-CGUCUGCUGcu---------GGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 79194 0.66 0.874695
Target:  5'- uGGUGcagcGCGGGCGAgaccuggaGGCCCCCGc -3'
miRNA:   3'- uCCACacuaCGUCUGCUg-------CUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 57358 0.66 0.874695
Target:  5'- cGGUGc-GUGCcuccGGCccgGACGGCCCCCGc -3'
miRNA:   3'- uCCACacUACGu---CUG---CUGCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 121979 0.66 0.874695
Target:  5'- cGGGUGUGcacGUu--CGACGGCCCCg- -3'
miRNA:   3'- -UCCACACua-CGucuGCUGCUGGGGgc -5'
21396 5' -57.4 NC_004812.1 + 85655 0.66 0.867479
Target:  5'- gGGGcGcUGGUGCcgGGGCGgguuGCGGuCCCCCGa -3'
miRNA:   3'- -UCCaC-ACUACG--UCUGC----UGCU-GGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 15114 0.66 0.860059
Target:  5'- uGGUGcGccgGUAcGGCGGCG-CCCCCGa -3'
miRNA:   3'- uCCACaCua-CGU-CUGCUGCuGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 80838 0.66 0.860059
Target:  5'- gGGGgcaccGUGGUGguGcCGAgCGGCCCCa- -3'
miRNA:   3'- -UCCa----CACUACguCuGCU-GCUGGGGgc -5'
21396 5' -57.4 NC_004812.1 + 125422 0.66 0.860059
Target:  5'- cGGgacGAcccUGCGGACGACGgACCgCCCa -3'
miRNA:   3'- uCCacaCU---ACGUCUGCUGC-UGG-GGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.