miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21398 5' -64.1 NC_004812.1 + 45603 0.65 0.591229
Target:  5'- --cUCAGGgccaggaagguucUGGCGGUCgCGCggcuguucCGCCCGu -3'
miRNA:   3'- cacAGUCC-------------ACCGCCAGgGCG--------GCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 95782 0.65 0.58931
Target:  5'- cGUGgagcCGGG-GGCGGUgCUGgugaagugaccgccCCGCCCGa -3'
miRNA:   3'- -CACa---GUCCaCCGCCAgGGC--------------GGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 130478 0.66 0.586434
Target:  5'- -cGUCGagcccggguGGUcGGCGGUCgcgaucccggacgcgCUGCCGCCCc -3'
miRNA:   3'- caCAGU---------CCA-CCGCCAG---------------GGCGGCGGGc -5'
21398 5' -64.1 NC_004812.1 + 69515 0.66 0.582602
Target:  5'- -gGUCGagacGGaGGCcgccgGGUCCgGCCGCCCc -3'
miRNA:   3'- caCAGU----CCaCCG-----CCAGGgCGGCGGGc -5'
21398 5' -64.1 NC_004812.1 + 57638 0.66 0.582602
Target:  5'- uUGUCGGGggGGCcgucgccaaacaGGUCguCCGCgGCCCc -3'
miRNA:   3'- cACAGUCCa-CCG------------CCAG--GGCGgCGGGc -5'
21398 5' -64.1 NC_004812.1 + 11974 0.66 0.582602
Target:  5'- cGUGUCccgcGGG-GGCGGggUUCCGCCGgCgGg -3'
miRNA:   3'- -CACAG----UCCaCCGCC--AGGGCGGCgGgC- -5'
21398 5' -64.1 NC_004812.1 + 118556 0.66 0.582602
Target:  5'- -cGU-GGGUcGGCacGUCCUGUCGCCCGc -3'
miRNA:   3'- caCAgUCCA-CCGc-CAGGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 112507 0.66 0.581646
Target:  5'- -cGUCAGGcgggcccUGuucuacgccaccGCGGUCCUGCgggCGCCCGc -3'
miRNA:   3'- caCAGUCC-------AC------------CGCCAGGGCG---GCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 8614 0.66 0.573048
Target:  5'- -cGUCGcccu-CGGcCCCGCCGCCCGg -3'
miRNA:   3'- caCAGUccaccGCCaGGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 108715 0.66 0.573048
Target:  5'- gGUGaUCGGGgaaUGGCGaG-CUCGCCGCCg- -3'
miRNA:   3'- -CAC-AGUCC---ACCGC-CaGGGCGGCGGgc -5'
21398 5' -64.1 NC_004812.1 + 54795 0.66 0.573048
Target:  5'- -aG-CGGGggcgccGCGGuUCCUGCCGUCCGa -3'
miRNA:   3'- caCaGUCCac----CGCC-AGGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 97672 0.66 0.573048
Target:  5'- -cGgCAGGccaGGCGGccCCCGCCGagaCCGg -3'
miRNA:   3'- caCaGUCCa--CCGCCa-GGGCGGCg--GGC- -5'
21398 5' -64.1 NC_004812.1 + 18449 0.66 0.567333
Target:  5'- -cGUCcGGUGGCgcggcgggggggcgcGGcCCCGC-GCCCGc -3'
miRNA:   3'- caCAGuCCACCG---------------CCaGGGCGgCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 43860 0.66 0.563531
Target:  5'- -cGUCcGGgcgcGGCGG-CgCCGCCGCgCGg -3'
miRNA:   3'- caCAGuCCa---CCGCCaG-GGCGGCGgGC- -5'
21398 5' -64.1 NC_004812.1 + 103679 0.66 0.563531
Target:  5'- -cGUCAGGgccucgcaguaGGCGGgcagguccUCCCGgCGCgCCGg -3'
miRNA:   3'- caCAGUCCa----------CCGCC--------AGGGCgGCG-GGC- -5'
21398 5' -64.1 NC_004812.1 + 101264 0.66 0.563531
Target:  5'- -cGUCAGGcgGGCGaa-CUGCCGCCg- -3'
miRNA:   3'- caCAGUCCa-CCGCcagGGCGGCGGgc -5'
21398 5' -64.1 NC_004812.1 + 123909 0.66 0.563531
Target:  5'- -gGggAGGUGcuggcgcccGCGGUCCCggGCCGgCCCGg -3'
miRNA:   3'- caCagUCCAC---------CGCCAGGG--CGGC-GGGC- -5'
21398 5' -64.1 NC_004812.1 + 41106 0.66 0.563531
Target:  5'- -cGUUccucgAGGUgaGGcCGGg-CCGCCGCCCGg -3'
miRNA:   3'- caCAG-----UCCA--CC-GCCagGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 67800 0.66 0.561632
Target:  5'- --uUCGGGgggGGCGGgcccggcagcccCCCGuCCGUCCGa -3'
miRNA:   3'- cacAGUCCa--CCGCCa-----------GGGC-GGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 38376 0.66 0.554056
Target:  5'- -aGgCGGGcGGCGGggCCCGCCgggaGCUCGg -3'
miRNA:   3'- caCaGUCCaCCGCCa-GGGCGG----CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.